C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007SF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs633 VISTA 9606 5:1811941-2413316
GeneTranscriptPositionBiotype
ENSG00000113430 (IRX4)
iroquois homeobox 4 		ENST00000231357 (IRX4-001) 1877427-1882766 protein_coding
ENST00000505790 (IRX4-004) 1877448-1887218 protein_coding
ENST00000505938 (IRX4-006) 1878785-1881093 processed_transcript
ENST00000508261 (IRX4-002) 1877814-1882752 nonsense_mediated_decay
ENST00000511126 (IRX4-005) 1879670-1882744 protein_coding
ENST00000513692 (IRX4-003) 1877413-1887236 protein_coding
ENST00000613726 (IRX4-201) 1877427-1886984 protein_coding
ENST00000622814 (IRX4-202) 1877427-1887179 protein_coding
ENSG00000145494 (NDUFS6)
NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) 		ENST00000274137 (NDUFS6-001) 1801400-1816605 protein_coding
ENST00000469176 (NDUFS6-002) 1801415-1814699 protein_coding
ENST00000510329 (NDUFS6-003) 1801421-1802279 processed_transcript
ENSG00000248597 (RP11-259O2.2)
 ENST00000511698 (RP11-259O2.2-001) 1963609-1967154 lincRNA
ENSG00000248994 (RP11-259O2.1)
 ENST00000511693 (RP11-259O2.1-001) 1933863-1959176 lincRNA
ENST00000513419 (RP11-259O2.1-002) 1939772-1958901 lincRNA
ENSG00000249116 (CTD-2194D22.3)
 ENST00000506335 (CTD-2194D22.3-001) 1883966-1884649 antisense
ENSG00000249326 (CTD-2194D22.4)
uncharacterized LOC101929081 		ENST00000514569 (CTD-2194D22.4-001) 1887332-1900493 antisense
ENSG00000249731 (RP11-259O2.3)
 ENST00000514519 (RP11-259O2.3-001) 1968094-1969013 lincRNA
ENSG00000249966 (CTD-2194D22.1)
 ENST00000503386 (CTD-2194D22.1-001) 1850950-1851497 antisense
ENSG00000250417 (CTD-2194D22.2)
 ENST00000509455 (CTD-2194D22.2-001) 1855970-1856568 lincRNA
ENSG00000279222 (CTD-2194D22.5)
 ENST00000623526 (CTD-2194D22.5-001) 1858409-1859890 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007SF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs633 VISTA 10090 13:72816617-73418032
GeneTranscriptPositionBiotype
ENSMUSG00000021604 (Irx4)
Iroquois related homeobox 4 (Drosophila) 		ENSMUST00000022095 (Irx4-001) 73260497-73269608 protein_coding
ENSMUST00000176684 (Irx4-002) 73260479-73269608 protein_coding
ENSMUSG00000021606 (Ndufs6)
NADH dehydrogenase (ubiquinone) Fe-S protein 6 		ENSMUST00000022097 (Ndufs6-001) 73319874-73328542 protein_coding
ENSMUST00000147407 (Ndufs6-002) 73319879-73328452 nonsense_mediated_decay
ENSMUSG00000021607 (Mrpl36)
mitochondrial ribosomal protein L36 		ENSMUST00000022098 (Mrpl36-201) 73331009-73332175 protein_coding
ENSMUSG00000066407 (Gm10263)
predicted gene 10263 		ENSMUST00000085163 (Gm10263-201) 73317844-73318143 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SF_0001ENSG00000113430ENST00000231357ENST00000505790ENST00000505938ENST00000508261ENST00000511126ENST00000513692ENST00000613726ENST00000622814ENSG00000145494ENST00000274137ENST00000469176ENST00000510329ENSG00000248597ENST00000511698ENSG00000248994ENST00000511693ENST00000513419ENSG00000249116ENST00000506335ENSG00000249326ENST00000514569ENSG00000249731ENST00000514519ENSG00000249966ENST00000503386ENSG00000250417ENST00000509455ENSG00000279222ENST00000623526CIL_0007SF_0002ENSMUSG00000021604ENSMUST00000022095ENSMUST00000176684ENSMUSG00000021606ENSMUST00000022097ENSMUST00000147407ENSMUSG00000021607ENSMUST00000022098ENSMUSG00000066407ENSMUST00000085163
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SF_0001ENSG00000113430ENST00000231357ENST00000505790ENST00000505938ENST00000508261ENST00000511126ENST00000513692ENST00000613726ENST00000622814ENSG00000145494ENST00000274137ENST00000469176ENSG00000248597ENST00000511698ENSG00000248994ENST00000511693ENST00000513419ENSG00000249116ENST00000506335ENSG00000249326ENST00000514569ENSG00000249731ENST00000514519ENSG00000249966ENST00000503386ENSG00000250417ENST00000509455ENSG00000279222ENST00000623526CIL_0007SF_0002ENSMUSG00000021604ENSMUST00000022095ENSMUST00000176684ENSMUSG00000021606ENSMUST00000022097ENSMUST00000147407ENSMUSG00000021607ENSMUST00000022098ENSMUSG00000066407ENSMUST00000085163
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113430 ENST00000231357 N/A 0.055±0.00 N/A N/A 0.154±0.12 N/A 0.566±0.00 N/A N/A N/A N/A 0.226±0.00 N/A 0.126±0.00
ENST00000505790 N/A N/A N/A N/A N/A N/A 1.805±0.00 0.042±0.00 N/A N/A N/A N/A N/A 0.164±0.00
ENST00000505938 N/A N/A N/A N/A N/A N/A 0.419±0.00 N/A N/A 0.076±0.00 N/A 0.296±0.21 0.293±0.00 N/A
ENST00000508261 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 0.088±0.00 N/A
ENST00000511126 0.062±0.00 N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000513692 N/A N/A N/A N/A N/A N/A 1.412±0.00 N/A N/A N/A 0.724±0.00 N/A N/A N/A
ENST00000613726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.545±0.00 N/A N/A
ENST00000622814 N/A N/A N/A N/A N/A N/A 0.827±0.00 N/A N/A N/A N/A 0.584±0.00 N/A N/A
ENSG00000145494 ENST00000274137 27.255±0.00 30.346±0.00 2.537±0.00 17.644±10.80 15.744±14.41 19.055±15.48 28.070±21.19 31.787±23.77 13.663±8.69 11.755±10.58 22.974±11.65 28.718±19.80 43.025±11.49 26.711±11.32
ENST00000469176 25.653±0.00 32.145±0.00 3.361±0.00 10.414±0.00 16.292±14.93 25.032±0.00 46.830±0.00 20.033±0.00 13.813±0.00 13.072±0.00 20.558±0.00 34.703±40.99 59.449±0.00 34.272±9.49
ENST00000510329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248597 ENST00000511698 N/A N/A N/A 0.157±0.00 0.260±0.00 N/A 0.034±0.00 0.074±0.00 N/A N/A N/A 0.143±0.00 N/A 0.227±0.00
ENSG00000248994 ENST00000511693 N/A 0.051±0.00 N/A 0.235±0.00 0.358±0.14 0.190±0.00 0.109±0.06 0.052±0.00 N/A 0.287±0.00 N/A 0.264±0.08 N/A 0.633±0.00
ENST00000513419 0.077±0.00 N/A N/A N/A 0.216±0.00 0.241±0.00 N/A N/A N/A N/A N/A N/A N/A 0.231±0.00
ENSG00000249116 ENST00000506335 N/A 0.184±0.00 N/A N/A 0.103±0.00 N/A 5.279±2.57 N/A N/A N/A 6.749±1.92 0.206±0.00 N/A N/A
ENSG00000249326 ENST00000514569 0.033±0.00 0.041±0.00 N/A 0.009±0.00 0.008±0.00 N/A 0.046±0.00 0.024±0.00 0.021±0.00 N/A N/A N/A N/A 0.035±0.01
ENSG00000249731 ENST00000514519 3.867±0.00 10.098±0.00 45.604±0.00 17.581±11.50 29.151±24.72 24.559±21.11 25.499±19.35 21.727±16.67 27.429±26.27 32.069±29.99 9.624±8.28 20.236±20.12 8.039±5.68 16.068±10.50
ENSG00000249966 ENST00000503386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00
ENSG00000250417 ENST00000509455 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.972±0.21
ENSG00000279222 ENST00000623526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021604 ENSMUST00000022095 N/A N/A N/A 0.511±0.32 0.750±0.21 N/A 2.806±1.23 0.094±0.01 0.011±0.00 N/A N/A N/A 0.113±0.00 N/A
ENSMUST00000176684 N/A 0.042±0.02 N/A 0.448±0.38 0.947±0.55 0.240±0.09 3.462±1.20 0.081±0.02 0.005±0.00 N/A 0.028±0.00 0.038±0.02 3.201±0.00 N/A
ENSMUSG00000021606 ENSMUST00000022097 41.467±5.31 11.022±1.67 116.951±16.12 81.466±11.84 30.574±10.50 32.156±6.83 274.758±23.78 143.037±37.85 97.156±44.84 29.193±4.42 181.486±14.14 32.612±34.25 85.679±36.08 62.087±7.18
ENSMUST00000147407 6.687±2.18 6.287±2.98 N/A N/A 6.337±2.34 8.265±2.10 N/A 16.135±0.00 13.348±2.59 4.216±0.94 18.282±0.00 6.482±3.00 N/A 16.506±5.28
ENSMUSG00000021607 ENSMUST00000022098 44.237±5.64 142.217±16.32 37.747±3.62 20.839±10.89 71.981±29.58 100.397±7.31 29.759±5.07 46.777±6.57 44.869±7.52 46.652±6.97 23.938±1.72 64.479±26.00 24.748±10.18 12.159±5.36
ENSMUSG00000066407 ENSMUST00000085163 0.934±0.59 45.574±3.67 0.912±0.01 1.912±1.33 4.202±1.37 23.602±25.77 8.860±5.77 19.663±11.99 14.046±18.55 5.275±0.22 0.317±0.09 11.863±13.75 0.837±0.42 7.986±4.62

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