C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231357 IRX4-001 ENSG00000113430 9606 - 5:1877427-1882766 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartOvaryTestisENST00000231357
Transcript ID Adrenal Breast Heart Ovary Testis
ENST00000231357 0.055±0.00 0.154±0.12 0.566±0.00 0.226±0.00 0.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q6 CIL_0008Q6_0001 VISTA 5:1540437-2141987
CIL_0007SF CIL_0007SF_0001 VISTA 5:1811941-2413316

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 1254
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 1254
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 412
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 396
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 279
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 279
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 278
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 278
ENSMUST00000077337 Irx1-001 protein_coding Mus_musculus 0 261
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 230
ENSMUST00000167067 Irx2-005 protein_coding Mus_musculus 0 220
ENSMUST00000074372 Irx2-001 protein_coding Mus_musculus 0 220
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 209
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 209
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 0 209
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 0 198
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 0 198
ENSDART00000113480 irx3a-202 protein_coding Danio_rerio 2.00386e-43 182
ENSDART00000074895 irx3a-201 protein_coding Danio_rerio 2.00386e-43 182
ENSDART00000043857 irx5a-001 protein_coding Danio_rerio 5e-39 167

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