C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Iroquois related homeobox 4 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176684 Irx4-002 ENSMUSG00000021604 10090 + 13:73260479-73269608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000176684
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000176684 0.042±0.02 0.448±0.38 0.947±0.55 0.240±0.09 3.462±1.20 0.081±0.02 0.005±0.00 0.028±0.00 0.038±0.02 3.201±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092V CIL_00092V_0002 VISTA 13:72733138-73336182
CIL_0007SF CIL_0007SF_0002 VISTA 13:72816617-73418032
CIL_0008Q6 CIL_0008Q6_0002 VISTA 13:72998274-73600313

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005667 ISS transcription factor complex
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0030154 IEA cell differentiation
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 414
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 381
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 231
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 231
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 207
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 0 204
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 0 204
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 2.00386e-43 182
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 1254
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 241
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 241
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 239
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 0 200
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 246
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 239
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 0 200
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 1254
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 484
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 0 475
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 1459
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 246
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 230
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 0 200
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 780
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 780

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