C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505938 IRX4-006 ENSG00000113430 9606 - 5:1878785-1881093 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungOvaryPlacentaENST00000505938
Transcript ID Heart Lung Ovary Placenta
ENST00000505938 0.419±0.00 0.076±0.00 0.296±0.21 0.293±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q6 CIL_0008Q6_0001 VISTA 5:1540437-2141987
CIL_0007SF CIL_0007SF_0001 VISTA 5:1811941-2413316

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 484
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 484
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 307
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 307
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 279
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 279
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 278
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 278
ENSMUST00000077337 Irx1-001 protein_coding Mus_musculus 0 261
ENSDART00000042271 irx3b-001 protein_coding Danio_rerio 0 230
ENSMUST00000167067 Irx2-005 protein_coding Mus_musculus 0 220
ENSMUST00000074372 Irx2-001 protein_coding Mus_musculus 0 220
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 209
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 209
ENSDART00000036147 irx5b-001 protein_coding Danio_rerio 0 209
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 0 198
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 0 198
ENSDART00000113480 irx3a-202 protein_coding Danio_rerio 4.06377e-44 182
ENSDART00000074895 irx3a-201 protein_coding Danio_rerio 4.06377e-44 182
ENSDART00000043857 irx5a-001 protein_coding Danio_rerio 1e-39 167

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