C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007VJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs305 VISTA 9606 9:13639548-14240364
GeneTranscriptPositionBiotype
ENSG00000205636 (LINC00583)
long intergenic non-protein coding RNA 583 		ENST00000381010 (LINC00583-001) 13927971-13945610 lincRNA
ENSG00000213954 (ATP5HP3)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 3 		ENST00000396994 (ATP5HP3-009) 14068932-14069417 processed_pseudogene
ENSG00000223568 (RPL3P11)
ribosomal protein L3 pseudogene 11 		ENST00000434028 (RPL3P11-001) 14040716-14041861 processed_pseudogene
ENSG00000229268 (PES1P2)
pescadillo ribosomal biogenesis factor 1 pseudogene 2 		ENST00000449745 (PES1P2-001) 13986175-13987909 processed_pseudogene
ENSG00000234982 (RP11-280O24.3)
 ENST00000435137 (RP11-280O24.3-001) 14204248-14205039 processed_pseudogene
ENSG00000235533 (RP11-284P20.3)
 ENST00000442260 (RP11-284P20.3-001) 14025971-14030115 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0007VJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs305 VISTA 10090 4:81853582-82454380
GeneTranscriptPositionBiotype
ENSMUSG00000008575 (Nfib)
nuclear factor I/B 		ENSMUST00000050872 (Nfib-201) 82290173-82505308 protein_coding
ENSMUST00000064770 (Nfib-202) 82290176-82505308 protein_coding
ENSMUST00000107245 (Nfib-001) 82290173-82505770 protein_coding
ENSMUST00000107246 (Nfib-007) 82296081-82505770 protein_coding
ENSMUST00000107247 (Nfib-003) 82296048-82505707 protein_coding
ENSMUST00000107248 (Nfib-002) 82296048-82505707 protein_coding
ENSMUST00000122918 (Nfib-006) 82326825-82505310 retained_intron
ENSMUST00000135024 (Nfib-008) 82495984-82505779 retained_intron
ENSMUST00000140874 (Nfib-005) 82328594-82505310 retained_intron
ENSMUST00000148982 (Nfib-011) 82353052-82505764 retained_intron
ENSMUST00000152588 (Nfib-009) 82498544-82499316 processed_transcript
ENSMUST00000155821 (Nfib-010) 82498321-82705750 protein_coding
ENSMUSG00000085022 (Gm5860)
predicted gene 5860 		ENSMUST00000137810 (Gm5860-001) 82065431-82102808 lincRNA
ENSMUST00000151038 (Gm5860-003) 82065873-82067775 lincRNA
ENSMUST00000161588 (Gm5860-002) 82065957-82102673 lincRNA
ENSMUSG00000087110 (Gm11264)
predicted gene 11264 		ENSMUST00000143755 (Gm11264-001) 82033312-82065890 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VJ_0001ENSG00000205636ENST00000381010ENSG00000213954ENST00000396994ENSG00000223568ENST00000434028ENSG00000229268ENST00000449745ENSG00000234982ENST00000435137ENSG00000235533ENST00000442260CIL_0007VJ_0002ENSMUSG00000008575ENSMUST00000050872ENSMUST00000064770ENSMUST00000107245ENSMUST00000107246ENSMUST00000107247ENSMUST00000107248ENSMUST00000122918ENSMUST00000135024ENSMUST00000140874ENSMUST00000148982ENSMUST00000152588ENSMUST00000155821ENSMUSG00000085022ENSMUST00000137810ENSMUST00000151038ENSMUST00000161588ENSMUSG00000087110ENSMUST00000143755
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007VJ_0001ENSG00000205636ENST00000381010ENSG00000213954ENST00000396994ENSG00000223568ENST00000434028ENSG00000229268ENST00000449745ENSG00000234982ENST00000435137ENSG00000235533ENST00000442260CIL_0007VJ_0002ENSMUSG00000008575ENSMUST00000050872ENSMUST00000064770ENSMUST00000107245ENSMUST00000107246ENSMUST00000107247ENSMUST00000107248ENSMUSG00000085022ENSMUST00000137810ENSMUST00000151038ENSMUST00000161588ENSMUSG00000087110ENSMUST00000143755
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000205636 ENST00000381010 N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213954 ENST00000396994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00
ENSG00000223568 ENST00000434028 N/A 0.028±0.00 N/A 0.014±0.00 N/A 0.039±0.00 N/A N/A 0.012±0.00 N/A 0.012±0.00 N/A N/A 0.025±0.00
ENSG00000229268 ENST00000449745 0.010±0.00 N/A 0.095±0.00 0.033±0.00 0.011±0.00 0.031±0.00 0.049±0.00 0.022±0.00 N/A N/A N/A N/A 0.027±0.00 0.065±0.03
ENSG00000234982 ENST00000435137 0.088±0.00 0.468±0.00 0.163±0.00 0.129±0.00 0.167±0.02 0.181±0.00 0.123±0.10 0.097±0.00 0.105±0.00 0.339±0.06 0.184±0.00 0.178±0.14 N/A 0.208±0.00
ENSG00000235533 ENST00000442260 N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008575 ENSMUST00000050872 4.890±1.65 3.903±1.13 1.975±0.45 7.048±1.28 3.093±0.42 2.597±0.61 N/A 2.273±0.44 2.282±2.04 8.668±1.01 N/A 2.321±0.67 0.367±0.16 0.207±0.07
ENSMUST00000064770 10.002±0.90 7.984±0.52 11.134±0.93 14.473±7.32 8.227±1.08 2.632±0.51 14.837±1.78 4.922±0.77 2.497±1.34 17.975±1.07 6.318±1.68 4.755±1.35 0.948±0.52 0.347±0.08
ENSMUST00000107245 2.949±0.01 1.607±0.03 3.258±0.97 N/A 1.604±0.29 0.920±0.27 N/A 0.778±0.00 0.297±0.01 3.826±0.17 1.345±0.00 1.116±0.26 0.426±0.20 0.126±0.01
ENSMUST00000107246 N/A N/A N/A 10.268±0.00 N/A N/A N/A N/A N/A N/A N/A 10.689±0.00 1.163±0.56 0.913±0.00
ENSMUST00000107247 N/A 2.390±0.71 N/A N/A 3.519±0.76 1.423±0.41 N/A 2.195±0.42 2.177±0.23 N/A N/A 2.219±0.56 N/A 0.131±0.00
ENSMUST00000107248 4.863±0.00 1.634±0.12 N/A N/A 3.194±1.26 1.247±0.00 N/A N/A 3.614±0.00 N/A N/A 1.422±0.42 N/A 0.202±0.00
ENSMUST00000122918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085022 ENSMUST00000137810 0.043±0.00 0.163±0.06 0.024±0.01 0.124±0.10 0.230±0.11 N/A 0.594±0.05 0.044±0.00 0.040±0.02 0.056±0.00 2.957±0.72 0.128±0.09 0.095±0.12 0.591±0.29
ENSMUST00000151038 0.184±0.02 0.123±0.00 0.009±0.00 0.025±0.01 0.077±0.04 N/A 0.497±0.04 0.094±0.04 0.021±0.01 0.033±0.00 0.975±0.16 0.146±0.12 0.013±0.01 0.005±0.00
ENSMUST00000161588 N/A N/A N/A N/A N/A N/A N/A 0.257±0.04 N/A 0.373±0.00 N/A N/A N/A N/A
ENSMUSG00000087110 ENSMUST00000143755 N/A N/A 0.010±0.01 N/A N/A N/A 0.089±0.00 N/A 0.003±0.00 N/A N/A N/A N/A 0.053±0.04

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