C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor I/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107246 Nfib-007 ENSMUSG00000008575 10090 - 4:82296081-82505770 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000107246
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000107246 10.268±0.00 10.689±0.00 1.163±0.56 0.913±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000746 CIL_000746_0002 CGP 4:81278500-82705750
CIL_0007VJ CIL_0007VJ_0002 VISTA 4:81853582-82454380
CIL_000143 CIL_000143_0002 CGP 4:82290173-82859958

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006351 IEA transcription, DNA-templated
GO:0008285 IMP negative regulation of cell proliferation
GO:0030324 IMP lung development
GO:0030900 IMP forebrain development
GO:0030902 IMP hindbrain development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380921 NFIB-006 protein_coding Homo_sapiens 0 1430
ENST00000380924 NFIB-008 protein_coding Homo_sapiens 0 1003
ENST00000380934 NFIB-201 protein_coding Homo_sapiens 0 1812
ENST00000380953 NFIB-005 protein_coding Homo_sapiens 0 2113
ENST00000380959 NFIB-001 protein_coding Homo_sapiens 0 2440
ENST00000397575 NFIB-004 protein_coding Homo_sapiens 0 2473
ENST00000397579 NFIB-002 protein_coding Homo_sapiens 0 3770
ENST00000397581 NFIB-003 protein_coding Homo_sapiens 0 2713
ENST00000493697 NFIB-007 protein_coding Homo_sapiens 0 730
ENST00000543693 NFIB-202 protein_coding Homo_sapiens 0 1064
ENST00000606230 NFIB-009 protein_coding Homo_sapiens 0 241
ENST00000622101 NFIB-203 protein_coding Homo_sapiens 0 2451
ENST00000622520 NFIB-204 protein_coding Homo_sapiens 0 1434

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