C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007YF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm279 VISTA 9606 9:117463172-118064065
GeneTranscriptPositionBiotype
ENSG00000136869 (TLR4)
toll-like receptor 4 		ENST00000355622 (TLR4-001) 117704372-117716871 protein_coding
ENST00000394487 (TLR4-002) 117704332-117715775 protein_coding
ENST00000472304 (TLR4-003) 117704389-117714952 processed_transcript
ENST00000490685 (TLR4-004) 117708197-117708979 processed_transcript
ENSG00000228512 (RP11-281A20.2)
 ENST00000421509 (RP11-281A20.2-001) 117783448-117868071 lincRNA
ENSG00000231901 (RP11-281A20.1)
 ENST00000449730 (RP11-281A20.1-001) 117840322-117897256 lincRNA
ENSG00000233569 (RP11-500B12.1)
 ENST00000450938 (RP11-500B12.1-001) 117648606-117657027 lincRNA
ENSG00000235133 (RPL35AP22)
ribosomal protein L35a pseudogene 22 		ENST00000436855 (RPL35AP22-001) 117685254-117685588 processed_pseudogene
CIL_0007YF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm279 VISTA 10090 4:66594392-67195290
GeneTranscriptPositionBiotype
ENSMUSG00000039005 (Tlr4)
toll-like receptor 4 		ENSMUST00000048096 (Tlr4-001) 66827584-66842800 protein_coding
ENSMUST00000107365 (Tlr4-004) 66827613-66930284 protein_coding
ENSMUST00000143580 (Tlr4-002) 66827619-66839429 processed_transcript
ENSMUST00000147008 (Tlr4-003) 66828202-66839618 processed_transcript
ENSMUSG00000082053 (Gm11220)
predicted gene 11220 		ENSMUST00000118844 (Gm11220-001) 66725070-66725544 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YF_0001ENSG00000136869ENST00000355622ENST00000394487ENST00000472304ENST00000490685ENSG00000228512ENST00000421509ENSG00000231901ENST00000449730ENSG00000233569ENST00000450938ENSG00000235133ENST00000436855CIL_0007YF_0002ENSMUSG00000039005ENSMUST00000048096ENSMUST00000107365ENSMUST00000143580ENSMUST00000147008ENSMUSG00000082053ENSMUST00000118844
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YF_0001ENSG00000136869ENST00000355622ENST00000394487ENST00000472304ENSG00000228512ENST00000421509ENSG00000231901ENST00000449730ENSG00000233569ENST00000450938ENSG00000235133ENST00000436855CIL_0007YF_0002ENSMUSG00000039005ENSMUST00000048096ENSMUST00000107365ENSMUST00000143580ENSMUST00000147008ENSMUSG00000082053ENSMUST00000118844
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136869 ENST00000355622 12.873±0.00 N/A 0.969±0.00 0.968±0.19 1.818±0.21 0.796±0.19 0.876±0.58 2.226±0.76 0.747±0.40 2.392±0.54 N/A 0.495±0.03 2.678±0.63 N/A
ENST00000394487 N/A N/A N/A N/A N/A N/A 0.670±0.00 0.664±0.00 N/A N/A 0.431±0.00 1.193±0.00 N/A 0.060±0.00
ENST00000472304 N/A N/A 0.715±0.00 1.986±0.00 5.194±0.00 1.822±0.00 0.979±0.00 0.752±0.00 3.337±0.00 1.872±0.00 2.351±0.00 1.881±0.00 N/A N/A
ENST00000490685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228512 ENST00000421509 0.053±0.00 N/A N/A 0.197±0.00 N/A 0.076±0.00 N/A 0.121±0.00 N/A 0.179±0.00 N/A 0.159±0.06 0.083±0.03 0.084±0.06
ENSG00000231901 ENST00000449730 N/A N/A N/A 0.421±0.00 N/A N/A N/A 0.080±0.00 0.072±0.00 0.459±0.00 N/A 0.039±0.01 0.162±0.00 0.116±0.00
ENSG00000233569 ENST00000450938 N/A 0.008±0.00 0.130±0.00 0.023±0.01 N/A N/A N/A 0.247±0.00 0.026±0.00 0.039±0.00 N/A 0.048±0.03 N/A 0.128±0.03
ENSG00000235133 ENST00000436855 N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039005 ENSMUST00000048096 3.179±0.35 0.402±0.15 1.393±0.05 0.097±0.00 2.298±0.31 1.571±0.34 1.013±0.15 0.756±0.18 0.313±0.15 2.732±0.85 0.240±0.09 0.999±0.38 0.293±0.16 0.058±0.03
ENSMUST00000107365 N/A N/A N/A N/A N/A N/A 0.390±0.08 N/A 0.072±0.00 N/A N/A 0.492±0.10 N/A N/A
ENSMUST00000143580 N/A 0.770±0.14 N/A N/A N/A 1.042±0.00 N/A 1.044±0.00 0.392±0.19 N/A N/A 1.294±0.36 N/A 0.158±0.07
ENSMUST00000147008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.679±0.00 N/A
ENSMUSG00000082053 ENSMUST00000118844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00

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