C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00080L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs43 VISTA 9606 16:54241966-54844013
GeneTranscriptPositionBiotype
ENSG00000177508 (IRX3)
iroquois homeobox 3
ENST00000329734 (IRX3-001) 54283304-54286763 protein_coding
ENST00000558054 (IRX3-003) 54283436-54285855 protein_coding
ENST00000558180 (IRX3-002) 54284120-54286724 retained_intron
ENSG00000259517 (RP11-324D17.1)
ENST00000561336 (RP11-324D17.1-001) 54245618-54270746 lincRNA
ENSG00000264079 (AC079412.1)
ENST00000579890 (AC079412.1-201) 54549303-54549396 miRNA
ENSG00000277559 (RP11-434E6.4)
ENST00000616682 (RP11-434E6.4-001) 54290965-54292422 lincRNA
CIL_00080L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs43 VISTA 10090 8:91725551-92327539
GeneTranscriptPositionBiotype
ENSMUSG00000031734 (Irx3)
Iroquois related homeobox 3
ENSMUST00000093312 (Irx3-002) 91798525-91801915 protein_coding
ENSMUST00000175795 (Irx3-001) 91798525-91801916 protein_coding
ENSMUSG00000031736 (Crnde)
colorectal neoplasia differentially expressed (non-protein coding)
ENSMUST00000034183 (Crnde-001) 92326038-92356120 lincRNA
ENSMUST00000178064 (Crnde-002) 92326038-92346870 lincRNA
ENSMUST00000179029 (Crnde-007) 92326250-92355891 lincRNA
ENSMUST00000179222 (Crnde-004) 92346932-92355869 lincRNA
ENSMUST00000179400 (Crnde-005) 92344910-92346870 lincRNA
ENSMUST00000179421 (Crnde-003) 92326038-92355831 lincRNA
ENSMUST00000180102 (Crnde-006) 92336211-92355764 lincRNA
ENSMUSG00000099664 (RP23-382M10.2)
predicted gene 28511
ENSMUST00000191594 (RP23-382M10.2-001) 91865871-91872995 lincRNA
ENSMUSG00000099812 (RP24-173E19.1)
predicted gene 28515
ENSMUST00000189823 (RP24-173E19.1-001) 91907565-91913066 lincRNA
ENSMUSG00000101613 (RP24-486I4.1)
predicted gene 28516
ENSMUST00000190257 (RP24-486I4.1-001) 92024442-92038438 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080L_0001ENSG00000177508ENST00000329734ENST00000558054ENST00000558180ENSG00000259517ENST00000561336ENSG00000264079ENST00000579890ENSG00000277559ENST00000616682CIL_00080L_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823ENSMUSG00000101613ENSMUST00000190257
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080L_0001ENSG00000177508ENST00000329734ENST00000558054ENST00000558180ENSG00000259517ENST00000561336ENSG00000264079ENST00000579890ENSG00000277559ENST00000616682CIL_00080L_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823ENSMUSG00000101613ENSMUST00000190257
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177508 ENST00000329734 0.633±0.00 6.251±0.00 N/A 0.132±0.00 1.748±1.66 0.162±0.00 6.725±6.18 3.808±3.55 0.177±0.06 4.680±1.90 2.463±0.00 0.964±0.75 0.778±0.18 0.886±0.80
ENST00000558054 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 0.631±0.00 N/A 0.692±0.00 N/A N/A N/A
ENST00000558180 N/A N/A N/A 0.075±0.00 3.018±2.41 0.741±0.00 0.551±0.00 N/A N/A N/A 2.008±0.00 1.055±0.71 N/A 0.562±0.48
ENSG00000259517 ENST00000561336 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A 0.134±0.00 N/A N/A N/A N/A 1.317±0.49
ENSG00000264079 ENST00000579890 0.185±0.00 N/A N/A 0.167±0.00 N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000277559 ENST00000616682 0.220±0.00 0.241±0.00 N/A 0.180±0.00 0.217±0.00 0.011±0.00 0.069±0.00 0.233±0.00 0.032±0.00 0.156±0.00 0.011±0.00 0.538±0.16 0.145±0.07 0.215±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031734 ENSMUST00000093312 N/A N/A 0.248±0.00 N/A 0.072±0.00 0.037±0.02 N/A N/A 0.049±0.02 N/A 0.804±0.00 3.181±0.00 N/A 0.023±0.00
ENSMUST00000175795 1.325±0.84 8.292±1.53 0.237±0.00 7.284±4.65 6.159±3.26 0.048±0.03 6.080±2.49 13.075±2.07 0.057±0.03 31.280±3.66 1.219±0.30 12.258±3.86 18.088±10.70 0.085±0.04
ENSMUSG00000031736 ENSMUST00000034183 0.079±0.03 N/A N/A 1.974±1.35 1.095±0.52 0.094±0.02 0.139±0.00 0.262±0.10 N/A 2.341±0.65 0.221±0.07 1.054±0.67 0.314±0.00 10.715±1.56
ENSMUST00000178064 0.145±0.08 N/A N/A 0.394±0.00 N/A 0.250±0.00 0.285±0.02 N/A 0.419±0.19 3.075±0.00 0.552±0.16 2.571±0.40 0.365±0.22 7.550±0.29
ENSMUST00000179029 N/A 1.276±0.00 N/A 0.828±0.00 N/A N/A 0.901±0.16 N/A N/A N/A 0.462±0.00 1.413±0.00 N/A N/A
ENSMUST00000179222 0.251±0.09 2.032±1.12 N/A N/A 1.438±0.51 0.199±0.07 1.138±0.40 0.579±0.00 1.886±0.12 3.591±0.00 0.540±0.00 2.860±1.31 0.761±0.30 N/A
ENSMUST00000179400 N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A 0.113±0.00 N/A N/A N/A
ENSMUST00000179421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000180102 0.158±0.09 N/A N/A 0.118±0.00 N/A N/A 0.282±0.00 N/A N/A N/A 0.375±0.00 N/A 0.154±0.09 N/A
ENSMUSG00000099664 ENSMUST00000191594 N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.141±0.06 0.370±0.12 N/A 0.173±0.00 0.157±0.00
ENSMUSG00000099812 ENSMUST00000189823 N/A 0.067±0.00 N/A 0.013±0.00 N/A N/A 0.013±0.00 N/A 0.009±0.01 0.029±0.01 N/A 0.049±0.03 0.165±0.11 N/A
ENSMUSG00000101613 ENSMUST00000190257 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A

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