C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: colorectal neoplasia differentially expressed (non-protein coding)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178064 Crnde-002 ENSMUSG00000031736 10090 - 8:92326038-92346870 lincRNA

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000178064
Transcript ID Adipose Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178064 0.145±0.08 0.394±0.00 0.250±0.00 0.285±0.02 0.419±0.19 3.075±0.00 0.552±0.16 2.571±0.40 0.365±0.22 7.550±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00080L CIL_00080L_0002 VISTA 8:91725551-92327539
CIL_00080M CIL_00080M_0002 VISTA 8:91729339-92330277
CIL_00080N CIL_00080N_0002 VISTA 8:91758697-92359642
CIL_00080R CIL_00080R_0002 VISTA 8:91763820-92364618
CIL_0008KP CIL_0008KP_0002 VISTA 8:91765542-92366816
CIL_0008ZH CIL_0008ZH_0002 VISTA 8:91770441-92371690
CIL_0008ZE CIL_0008ZE_0002 VISTA 8:91794559-92395829
CIL_0006IA CIL_0006IA_0002 CGP 8:91798525-92361456
CIL_0008ZD CIL_0008ZD_0002 VISTA 8:91800436-92401518
CIL_0008ZG CIL_0008ZG_0002 VISTA 8:91813436-92415404
CIL_0008ZF CIL_0008ZF_0002 VISTA 8:91827674-92428542
CIL_0008ZB CIL_0008ZB_0002 VISTA 8:91919224-92520146
CIL_0008ZC CIL_0008ZC_0002 VISTA 8:91931178-92532317
CIL_000986 CIL_000986_0002 VISTA 8:92144893-92745556
CIL_000989 CIL_000989_0002 VISTA 8:92149353-92750411
CIL_00098A CIL_00098A_0002 VISTA 8:92245404-92846474
CIL_000987 CIL_000987_0002 VISTA 8:92255075-92855722

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

No Homologs available.

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