C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Iroquois related homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093312 Irx3-002 ENSMUSG00000031734 10090 - 8:91798525-91801915 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLiverMuscleOvaryTestisENSMUST00000093312
Transcript ID Bladder Breast Colon Liver Muscle Ovary Testis
ENSMUST00000093312 0.248±0.00 0.072±0.00 0.037±0.02 0.049±0.02 0.804±0.00 3.181±0.00 0.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_0007X2 CIL_0007X2_0002 VISTA 8:91208767-91810326
CIL_0007X0 CIL_0007X0_0002 VISTA 8:91238298-91839821
CIL_0007WZ CIL_0007WZ_0002 VISTA 8:91245726-91847572
CIL_0000UO CIL_0000UO_0002 CGP 8:91313532-91801916
CIL_0007S8 CIL_0007S8_0002 VISTA 8:91322042-91923486
CIL_000856 CIL_000856_0002 VISTA 8:91356701-91958041
CIL_0007S7 CIL_0007S7_0002 VISTA 8:91361914-91962349
CIL_0007S6 CIL_0007S6_0002 VISTA 8:91364604-91965497
CIL_000857 CIL_000857_0002 VISTA 8:91449887-92051412
CIL_0007S5 CIL_0007S5_0002 VISTA 8:91504616-92105515
CIL_0007S4 CIL_0007S4_0002 VISTA 8:91526762-92128112
CIL_00080I CIL_00080I_0002 VISTA 8:91555876-92156486
CIL_00080Q CIL_00080Q_0002 VISTA 8:91673744-92274600
CIL_00080P CIL_00080P_0002 VISTA 8:91691197-92292386
CIL_00080L CIL_00080L_0002 VISTA 8:91725551-92327539
CIL_00080M CIL_00080M_0002 VISTA 8:91729339-92330277
CIL_00080N CIL_00080N_0002 VISTA 8:91758697-92359642
CIL_00080R CIL_00080R_0002 VISTA 8:91763820-92364618
CIL_0008KP CIL_0008KP_0002 VISTA 8:91765542-92366816
CIL_0008ZH CIL_0008ZH_0002 VISTA 8:91770441-92371690
CIL_0008ZE CIL_0008ZE_0002 VISTA 8:91794559-92395829
CIL_0006IA CIL_0006IA_0002 CGP 8:91798525-92361456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEP metanephros development
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007498 IGI mesoderm development
GO:0030424 IDA axon
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IDA negative regulation of neuron differentiation
GO:0045666 IDA positive regulation of neuron differentiation
GO:0072047 IEP proximal/distal pattern formation involved in nephron development
GO:0072086 IEP specification of loop of Henle identity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000044190 irx1a-002 protein_coding Danio_rerio 0 279
ENSDART00000006726 irx1a-001 protein_coding Danio_rerio 0 279
ENSDART00000148951 irx4a-002 retained_intron Danio_rerio 0 222
ENSDART00000051693 irx4a-001 protein_coding Danio_rerio 0 222
ENSDART00000130922 irx1b-201 protein_coding Danio_rerio 0 191
ENSDART00000079114 irx1b-001 protein_coding Danio_rerio 0 191
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 279
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 267
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 353
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 283
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 0 272
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 2017
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 283
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 0 272
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 279
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 279
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 279
ENST00000558054 IRX3-003 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 1221
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 250
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 0 272
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 279
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 279

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