C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00080M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs42 VISTA 9606 16:54245814-54846743
GeneTranscriptPositionBiotype
ENSG00000177508 (IRX3)
iroquois homeobox 3 		ENST00000329734 (IRX3-001) 54283304-54286763 protein_coding
ENST00000558054 (IRX3-003) 54283436-54285855 protein_coding
ENST00000558180 (IRX3-002) 54284120-54286724 retained_intron
ENSG00000259517 (RP11-324D17.1)
 ENST00000561336 (RP11-324D17.1-001) 54245618-54270746 lincRNA
ENSG00000264079 (AC079412.1)
 ENST00000579890 (AC079412.1-201) 54549303-54549396 miRNA
ENSG00000277559 (RP11-434E6.4)
 ENST00000616682 (RP11-434E6.4-001) 54290965-54292422 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_00080M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs42 VISTA 10090 8:91729339-92330277
GeneTranscriptPositionBiotype
ENSMUSG00000031734 (Irx3)
Iroquois related homeobox 3 		ENSMUST00000093312 (Irx3-002) 91798525-91801915 protein_coding
ENSMUST00000175795 (Irx3-001) 91798525-91801916 protein_coding
ENSMUSG00000031736 (Crnde)
colorectal neoplasia differentially expressed (non-protein coding) 		ENSMUST00000034183 (Crnde-001) 92326038-92356120 lincRNA
ENSMUST00000178064 (Crnde-002) 92326038-92346870 lincRNA
ENSMUST00000179029 (Crnde-007) 92326250-92355891 lincRNA
ENSMUST00000179222 (Crnde-004) 92346932-92355869 lincRNA
ENSMUST00000179400 (Crnde-005) 92344910-92346870 lincRNA
ENSMUST00000179421 (Crnde-003) 92326038-92355831 lincRNA
ENSMUST00000180102 (Crnde-006) 92336211-92355764 lincRNA
ENSMUSG00000099664 (RP23-382M10.2)
predicted gene 28511 		ENSMUST00000191594 (RP23-382M10.2-001) 91865871-91872995 lincRNA
ENSMUSG00000099812 (RP24-173E19.1)
predicted gene 28515 		ENSMUST00000189823 (RP24-173E19.1-001) 91907565-91913066 lincRNA
ENSMUSG00000101613 (RP24-486I4.1)
predicted gene 28516 		ENSMUST00000190257 (RP24-486I4.1-001) 92024442-92038438 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080M_0001ENSG00000177508ENST00000329734ENST00000558054ENST00000558180ENSG00000259517ENST00000561336ENSG00000264079ENST00000579890ENSG00000277559ENST00000616682CIL_00080M_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823ENSMUSG00000101613ENSMUST00000190257
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080M_0001ENSG00000177508ENST00000329734ENST00000558054ENST00000558180ENSG00000259517ENST00000561336ENSG00000264079ENST00000579890ENSG00000277559ENST00000616682CIL_00080M_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823ENSMUSG00000101613ENSMUST00000190257
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177508 ENST00000329734 0.633±0.00 6.251±0.00 N/A 0.132±0.00 1.748±1.66 0.162±0.00 6.725±6.18 3.808±3.55 0.177±0.06 4.680±1.90 2.463±0.00 0.964±0.75 0.778±0.18 0.886±0.80
ENST00000558054 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 0.631±0.00 N/A 0.692±0.00 N/A N/A N/A
ENST00000558180 N/A N/A N/A 0.075±0.00 3.018±2.41 0.741±0.00 0.551±0.00 N/A N/A N/A 2.008±0.00 1.055±0.71 N/A 0.562±0.48
ENSG00000259517 ENST00000561336 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A 0.134±0.00 N/A N/A N/A N/A 1.317±0.49
ENSG00000264079 ENST00000579890 0.185±0.00 N/A N/A 0.167±0.00 N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000277559 ENST00000616682 0.220±0.00 0.241±0.00 N/A 0.180±0.00 0.217±0.00 0.011±0.00 0.069±0.00 0.233±0.00 0.032±0.00 0.156±0.00 0.011±0.00 0.538±0.16 0.145±0.07 0.215±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031734 ENSMUST00000093312 N/A N/A 0.248±0.00 N/A 0.072±0.00 0.037±0.02 N/A N/A 0.049±0.02 N/A 0.804±0.00 3.181±0.00 N/A 0.023±0.00
ENSMUST00000175795 1.325±0.84 8.292±1.53 0.237±0.00 7.284±4.65 6.159±3.26 0.048±0.03 6.080±2.49 13.075±2.07 0.057±0.03 31.280±3.66 1.219±0.30 12.258±3.86 18.088±10.70 0.085±0.04
ENSMUSG00000031736 ENSMUST00000034183 0.079±0.03 N/A N/A 1.974±1.35 1.095±0.52 0.094±0.02 0.139±0.00 0.262±0.10 N/A 2.341±0.65 0.221±0.07 1.054±0.67 0.314±0.00 10.715±1.56
ENSMUST00000178064 0.145±0.08 N/A N/A 0.394±0.00 N/A 0.250±0.00 0.285±0.02 N/A 0.419±0.19 3.075±0.00 0.552±0.16 2.571±0.40 0.365±0.22 7.550±0.29
ENSMUST00000179029 N/A 1.276±0.00 N/A 0.828±0.00 N/A N/A 0.901±0.16 N/A N/A N/A 0.462±0.00 1.413±0.00 N/A N/A
ENSMUST00000179222 0.251±0.09 2.032±1.12 N/A N/A 1.438±0.51 0.199±0.07 1.138±0.40 0.579±0.00 1.886±0.12 3.591±0.00 0.540±0.00 2.860±1.31 0.761±0.30 N/A
ENSMUST00000179400 N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A 0.113±0.00 N/A N/A N/A
ENSMUST00000179421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000180102 0.158±0.09 N/A N/A 0.118±0.00 N/A N/A 0.282±0.00 N/A N/A N/A 0.375±0.00 N/A 0.154±0.09 N/A
ENSMUSG00000099664 ENSMUST00000191594 N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.141±0.06 0.370±0.12 N/A 0.173±0.00 0.157±0.00
ENSMUSG00000099812 ENSMUST00000189823 N/A 0.067±0.00 N/A 0.013±0.00 N/A N/A 0.013±0.00 N/A 0.009±0.01 0.029±0.01 N/A 0.049±0.03 0.165±0.11 N/A
ENSMUSG00000101613 ENSMUST00000190257 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A

Loading