C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00086Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1250 VISTA 9606 4:12824858-13425752
GeneTranscriptPositionBiotype
ENSG00000157869 (RAB28)
RAB28, member RAS oncogene family 		ENST00000288723 (RAB28-002) 13367724-13484365 protein_coding
ENST00000330852 (RAB28-001) 13367724-13484365 protein_coding
ENST00000338176 (RAB28-201) 13367725-13484365 protein_coding
ENST00000504644 (RAB28-008) 13368501-13381594 protein_coding
ENST00000508274 (RAB28-003) 13367724-13484331 nonsense_mediated_decay
ENST00000510528 (RAB28-005) 13459863-13474322 protein_coding
ENST00000511649 (RAB28-006) 13361354-13474345 protein_coding
ENSG00000205940 (HSP90AB2P)
heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene 		ENST00000507090 (HSP90AB2P-002) 13336482-13338657 transcribed_processed_pseudogene
ENST00000602906 (HSP90AB2P-001) 13333414-13338302 processed_transcript
ENSG00000250098 (RP11-22A3.1)
 ENST00000503163 (RP11-22A3.1-001) 12947574-12948670 lincRNA
ENSG00000250371 (RP11-22A3.2)
 ENST00000506899 (RP11-22A3.2-001) 12859101-12864961 lincRNA
CIL_00086Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1250 VISTA 10090 5:41080511-41681341
GeneTranscriptPositionBiotype
ENSMUSG00000029128 (Rab28)
RAB28, member RAS oncogene family 		ENSMUST00000031011 (Rab28-201) 41624976-41708155 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086Z_0001ENSG00000157869ENST00000288723ENST00000330852ENST00000338176ENST00000504644ENST00000508274ENST00000510528ENST00000511649ENSG00000205940ENST00000507090ENST00000602906ENSG00000250098ENST00000503163ENSG00000250371ENST00000506899CIL_00086Z_0002ENSMUSG00000029128ENSMUST00000031011
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00086Z_0001ENSG00000157869ENST00000288723ENST00000330852ENST00000508274ENST00000511649ENSG00000205940ENST00000507090ENST00000602906ENSG00000250098ENST00000503163ENSG00000250371ENST00000506899CIL_00086Z_0002ENSMUSG00000029128ENSMUST00000031011
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157869 ENST00000288723 1.595±0.00 N/A N/A 1.366±0.00 1.327±0.00 1.243±0.00 1.697±0.00 3.405±0.00 N/A 2.202±0.00 2.031±0.00 2.166±1.33 2.436±1.27 16.882±5.83
ENST00000330852 3.805±0.00 2.989±0.00 0.447±0.00 2.739±2.37 4.270±0.00 2.499±1.91 4.240±0.00 3.016±0.00 0.980±0.06 4.258±0.00 N/A 4.658±3.20 3.586±0.66 6.108±0.00
ENST00000338176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508274 N/A 1.800±0.00 N/A 1.239±0.00 N/A N/A 0.845±0.00 N/A 0.932±0.00 1.221±0.00 N/A 1.048±0.09 1.298±0.26 N/A
ENST00000510528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511649 N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A 1.192±0.00 N/A N/A
ENSG00000205940 ENST00000507090 N/A 0.153±0.00 0.387±0.00 N/A N/A N/A 0.139±0.00 N/A N/A N/A 0.034±0.00 0.066±0.01 N/A 0.204±0.00
ENST00000602906 1.729±0.00 1.590±0.00 N/A 4.754±0.00 2.376±0.00 6.175±0.00 2.935±0.00 1.658±1.64 0.709±0.00 2.497±0.00 0.032±0.00 0.661±0.50 0.070±0.03 4.197±0.00
ENSG00000250098 ENST00000503163 0.036±0.00 0.034±0.00 N/A N/A N/A N/A 0.096±0.00 N/A 0.029±0.00 N/A N/A N/A N/A 0.157±0.00
ENSG00000250371 ENST00000506899 0.020±0.00 0.023±0.00 N/A N/A 0.066±0.00 0.085±0.00 0.056±0.01 N/A 0.025±0.02 0.022±0.00 N/A 0.010±0.00 0.010±0.00 0.030±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029128 ENSMUST00000031011 14.510±4.95 67.852±33.67 21.846±2.30 15.607±6.15 17.738±6.57 26.928±3.34 4.998±1.30 16.404±2.90 8.243±1.56 29.733±4.82 5.998±0.78 19.674±6.98 7.178±2.57 21.178±6.20

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