C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB28, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157869 RAB28 9606 - 4:13361354-13484365 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288723 RAB28-002 13367724-13484365 protein_coding
  ENST00000330852 RAB28-001 13367724-13484365 protein_coding
  ENST00000338176 RAB28-201 13367725-13484365 protein_coding
  ENST00000504644 RAB28-008 13368501-13381594 protein_coding
  ENST00000508274 RAB28-003 13367724-13484331 nonsense_mediated_decay
  ENST00000510528 RAB28-005 13459863-13474322 protein_coding
  ENST00000511649 RAB28-006 13361354-13474345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000288723ENST00000330852ENST00000508274ENST00000511649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000288723 1.595±0.00 N/A N/A 1.366±0.00 1.327±0.00 1.243±0.00 1.697±0.00 3.405±0.00 N/A 2.202±0.00 2.031±0.00 2.166±1.33 2.436±1.27 16.882±5.83
ENST00000330852 3.805±0.00 2.989±0.00 0.447±0.00 2.739±2.37 4.270±0.00 2.499±1.91 4.240±0.00 3.016±0.00 0.980±0.06 4.258±0.00 N/A 4.658±3.20 3.586±0.66 6.108±0.00
ENST00000508274 N/A 1.800±0.00 N/A 1.239±0.00 N/A N/A 0.845±0.00 N/A 0.932±0.00 1.221±0.00 N/A 1.048±0.09 1.298±0.26 N/A
ENST00000511649 N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A 1.192±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XJ CIL_0001XJ_0001 CGP 4:11393150-13484365
CIL_00086Z CIL_00086Z_0001 VISTA 4:12824858-13425752
CIL_00097J CIL_00097J_0001 VISTA 4:13215873-13817543
CIL_00026M CIL_00026M_0001 CGP 4:13361354-13545050

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0035253 ISS ciliary rootlet
GO:0036064 ISS ciliary basal body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029128 Rab28 RAB28, member RAS oncogene family protein_coding Mus_musculus

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