C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB28, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508274 RAB28-003 ENSG00000157869 9606 - 4:13367724-13484331 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLiverLungOvaryPlacentaENST00000508274
Transcript ID Adrenal Brain Heart Liver Lung Ovary Placenta
ENST00000508274 1.800±0.00 1.239±0.00 0.845±0.00 0.932±0.00 1.221±0.00 1.048±0.09 1.298±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XJ CIL_0001XJ_0001 CGP 4:11393150-13484365
CIL_00086Z CIL_00086Z_0001 VISTA 4:12824858-13425752
CIL_00097J CIL_00097J_0001 VISTA 4:13215873-13817543
CIL_00026M CIL_00026M_0001 CGP 4:13361354-13545050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031011 Rab28-201 protein_coding Mus_musculus 0 453

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