C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB28, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000288723 RAB28-002 ENSG00000157869 9606 - 4:13367724-13484365 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000288723
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000288723 1.595±0.00 1.366±0.00 1.327±0.00 1.243±0.00 1.697±0.00 3.405±0.00 2.202±0.00 2.031±0.00 2.166±1.33 2.436±1.27 16.882±5.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XJ CIL_0001XJ_0001 CGP 4:11393150-13484365
CIL_00086Z CIL_00086Z_0001 VISTA 4:12824858-13425752
CIL_00097J CIL_00097J_0001 VISTA 4:13215873-13817543
CIL_00026M CIL_00026M_0001 CGP 4:13361354-13545050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 TAS:IEA GTPase activity
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006184 TAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019003 IDA GDP binding
GO:0035253 ISS ciliary rootlet
GO:0036064 ISS ciliary basal body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031011 Rab28-201 protein_coding Mus_musculus 0 883

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