C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB28, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031011 Rab28-201 ENSMUSG00000029128 10090 - 5:41624976-41708155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031011 14.510±4.95 67.852±33.67 21.846±2.30 15.607±6.15 17.738±6.57 26.928±3.34 4.998±1.30 16.404±2.90 8.243±1.56 29.733±4.82 5.998±0.78 19.674±6.98 7.178±2.57 21.178±6.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XJ CIL_0001XJ_0002 CGP 5:39613935-41708155
CIL_00086Z CIL_00086Z_0002 VISTA 5:41080511-41681341
CIL_00097J CIL_00097J_0002 VISTA 5:41437620-42039298
CIL_00026M CIL_00026M_0002 CGP 5:41624976-41764501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 ISS GTP binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008150 ND biological_process
GO:0019003 ISS GDP binding
GO:0035253 ISS ciliary rootlet
GO:0036064 ISS ciliary basal body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288723 RAB28-002 protein_coding Homo_sapiens 0 883
ENST00000330852 RAB28-001 protein_coding Homo_sapiens 0 1068
ENST00000338176 RAB28-201 protein_coding Homo_sapiens 0 883
ENST00000411517 RAB28P1-001 processed_pseudogene Homo_sapiens 0 375
ENST00000427490 RP11-1114A5.5-001 processed_pseudogene Homo_sapiens 0 682
ENST00000448325 RAB28P3-001 processed_pseudogene Homo_sapiens 0 370
ENST00000454299 RP11-211N8.5-001 processed_pseudogene Homo_sapiens 0 407
ENST00000504644 RAB28-008 protein_coding Homo_sapiens 0 270
ENST00000508274 RAB28-003 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000511649 RAB28-006 protein_coding Homo_sapiens 0 484
ENST00000622233 RP11-120E5.2-001 processed_pseudogene Homo_sapiens 0 372

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