C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00088X_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm569 VISTA 9606 12:65441147-66043028
GeneTranscriptPositionBiotype
ENSG00000174099 (MSRB3)
methionine sulfoxide reductase B3 		ENST00000308259 (MSRB3-002) 65278643-65466907 protein_coding
ENST00000355192 (MSRB3-001) 65278643-65466906 protein_coding
ENST00000446731 (MSRB3-010) 65326875-65488244 protein_coding
ENST00000535143 (MSRB3-009) 65344134-65463344 processed_transcript
ENST00000535239 (MSRB3-004) 65278987-65463258 protein_coding
ENST00000535664 (MSRB3-003) 65278742-65463389 protein_coding
ENST00000538045 (MSRB3-005) 65278926-65453787 protein_coding
ENST00000538725 (MSRB3-006) 65278704-65316317 processed_transcript
ENST00000540804 (MSRB3-008) 65278732-65454261 protein_coding
ENST00000541189 (MSRB3-011) 65278744-65488095 protein_coding
ENST00000541897 (MSRB3-007) 65278669-65463192 nonsense_mediated_decay
ENST00000614640 (MSRB3-201) 65278987-65466898 protein_coding
ENSG00000197301 (RP11-366L20.2)
 ENST00000356215 (RP11-366L20.2-001) 65855947-65882041 antisense
ENST00000439236 (RP11-366L20.2-004) 65851340-65882167 antisense
ENST00000504038 (RP11-366L20.2-003) 65873812-65881578 antisense
ENST00000536648 (RP11-366L20.2-002) 65866804-65881578 antisense
ENSG00000213343 (RPL21P18)
ribosomal protein L21 pseudogene 18 		ENST00000469899 (RPL21P18-001) 66037235-66037714 processed_pseudogene
ENSG00000213344 (PCNPP3)
PEST containing nuclear protein pseudogene 3 		ENST00000393579 (PCNPP3-001) 65645992-65646462 processed_pseudogene
ENSG00000241749 (RPSAP52)
ribosomal protein SA pseudogene 52 		ENST00000489520 (RPSAP52-002) 65758020-65826974 processed_transcript
ENST00000493929 (RPSAP52-001) 65758121-65758998 transcribed_processed_pseudogene
ENST00000622976 (RPSAP52-003) 65825975-65826997 TEC
ENSG00000255866 (RP11-221N13.2)
 ENST00000545750 (RP11-221N13.2-001) 65559591-65560889 lincRNA
ENSG00000256083 (RP11-366L20.3)
 ENST00000544279 (RP11-366L20.3-001) 65934777-65948479 antisense
ENSG00000256259 (RP11-366L20.4)
 ENST00000536217 (RP11-366L20.4-001) 66027725-66031066 lincRNA
ENSG00000256268 (RP11-221N13.3)
 ENST00000539116 (RP11-221N13.3-002) 65602869-65606503 lincRNA
ENST00000541391 (RP11-221N13.3-001) 65602878-65612997 lincRNA
ENSG00000256915 (RP11-221N13.4)
 ENST00000540875 (RP11-221N13.4-001) 65644334-65663299 lincRNA
ENST00000545188 (RP11-221N13.4-002) 65644397-65647855 lincRNA
ENSG00000277945 (RP11-677M24.1)
 ENST00000615897 (RP11-677M24.1-001) 65830750-65831050 sense_intronic
CIL_00088X_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm569 VISTA 10090 10:120251958-120853597
GeneTranscriptPositionBiotype
ENSMUSG00000034764 (1700006J14Rik)
RIKEN cDNA 1700006J14 gene 		ENSMUST00000041178 (1700006J14Rik-001) 120364157-120382836 processed_transcript
ENSMUST00000159621 (1700006J14Rik-003) 120364170-120380724 processed_transcript
ENSMUST00000160091 (1700006J14Rik-002) 120364158-120384336 processed_transcript
ENSMUST00000161511 (1700006J14Rik-004) 120364213-120383829 processed_transcript
ENSMUSG00000044544 (4921513I03Rik)
RIKEN cDNA 4921513I03 gene 		ENSMUST00000056994 (4921513I03Rik-201) 120765774-120778886 protein_coding
ENSMUSG00000051236 (Msrb3)
methionine sulfoxide reductase B3 		ENSMUST00000092143 (Msrb3-001) 120781096-120899101 protein_coding
ENSMUST00000130950 (Msrb3-003) 120783894-120871152 protein_coding
ENSMUST00000139961 (Msrb3-002) 120783752-120850468 processed_transcript
ENSMUSG00000056758 (Hmga2)
high mobility group AT-hook 2 		ENSMUST00000072777 (Hmga2-001) 120361275-120476469 protein_coding
ENSMUST00000159310 (Hmga2-003) 120470290-120476292 retained_intron
ENSMUST00000159699 (Hmga2-002) 120361275-120476469 protein_coding
ENSMUSG00000086444 (Gm15961)
predicted gene 15961 		ENSMUST00000156090 (Gm15961-001) 120800677-120801794 sense_intronic
ENSMUSG00000090191 (9230105E05Rik)
RIKEN cDNA 9230105E05 gene 		ENSMUST00000161291 (9230105E05Rik-001) 120389523-120392793 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088X_0001ENSG00000174099ENST00000308259ENST00000355192ENST00000446731ENST00000535143ENST00000535239ENST00000535664ENST00000538045ENST00000538725ENST00000540804ENST00000541189ENST00000541897ENST00000614640ENSG00000197301ENST00000356215ENST00000439236ENST00000504038ENST00000536648ENSG00000213343ENST00000469899ENSG00000213344ENST00000393579ENSG00000241749ENST00000489520ENST00000493929ENST00000622976ENSG00000255866ENST00000545750ENSG00000256083ENST00000544279ENSG00000256259ENST00000536217ENSG00000256268ENST00000539116ENST00000541391ENSG00000256915ENST00000540875ENST00000545188ENSG00000277945ENST00000615897CIL_00088X_0002ENSMUSG00000034764ENSMUST00000041178ENSMUST00000159621ENSMUST00000160091ENSMUST00000161511ENSMUSG00000044544ENSMUST00000056994ENSMUSG00000051236ENSMUST00000092143ENSMUST00000130950ENSMUST00000139961ENSMUSG00000056758ENSMUST00000072777ENSMUST00000159310ENSMUST00000159699ENSMUSG00000086444ENSMUST00000156090ENSMUSG00000090191ENSMUST00000161291
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088X_0001ENSG00000174099ENST00000308259ENST00000355192ENST00000535143ENST00000614640ENSG00000197301ENST00000356215ENST00000439236ENST00000504038ENST00000536648ENSG00000213343ENST00000469899ENSG00000213344ENST00000393579ENSG00000241749ENST00000489520ENST00000493929ENST00000622976ENSG00000255866ENST00000545750ENSG00000256083ENST00000544279ENSG00000256259ENST00000536217ENSG00000256268ENST00000539116ENST00000541391ENSG00000256915ENST00000540875ENSG00000277945ENST00000615897CIL_00088X_0002ENSMUSG00000034764ENSMUST00000041178ENSMUST00000159621ENSMUST00000160091ENSMUST00000161511ENSMUSG00000044544ENSMUST00000056994ENSMUSG00000051236ENSMUST00000092143ENSMUSG00000056758ENSMUST00000072777ENSMUST00000159310ENSMUST00000159699ENSMUSG00000086444ENSMUST00000156090ENSMUSG00000090191ENSMUST00000161291
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000174099 ENST00000308259 1.752±0.00 2.971±0.00 N/A 1.417±0.00 3.699±0.12 4.117±0.00 7.221±2.58 0.362±0.00 27.576±0.00 6.112±0.35 6.973±0.62 2.946±0.27 3.183±1.66 4.689±0.00
ENST00000355192 8.002±0.00 13.601±0.00 N/A 0.902±0.00 23.218±0.00 11.913±10.09 7.012±0.00 6.363±0.00 3.154±2.63 11.164±0.00 2.789±0.00 7.068±3.95 4.583±0.80 10.010±7.99
ENST00000446731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535143 N/A N/A N/A N/A N/A N/A N/A 5.167±0.00 N/A N/A N/A N/A N/A N/A
ENST00000535239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614640 2.173±0.00 2.460±0.00 N/A 1.642±0.00 N/A 16.410±0.00 7.111±0.00 1.086±0.00 N/A N/A N/A N/A 0.647±0.00 N/A
ENSG00000197301 ENST00000356215 0.169±0.00 0.022±0.00 0.054±0.00 0.020±0.00 0.062±0.00 0.120±0.00 0.022±0.00 N/A 0.042±0.03 N/A 0.082±0.00 0.107±0.00 0.018±0.00 N/A
ENST00000439236 1.242±0.00 N/A N/A 0.550±0.00 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504038 N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A N/A N/A 0.130±0.00 N/A N/A N/A
ENST00000536648 N/A N/A N/A N/A N/A N/A 0.175±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000213343 ENST00000469899 0.027±0.00 0.055±0.00 N/A 0.082±0.00 0.053±0.00 N/A N/A N/A 0.025±0.00 0.128±0.00 0.050±0.00 N/A N/A 0.222±0.00
ENSG00000213344 ENST00000393579 N/A N/A N/A 0.067±0.00 0.065±0.00 0.030±0.00 0.029±0.00 N/A N/A N/A N/A 0.368±0.00 0.099±0.00 0.084±0.00
ENSG00000241749 ENST00000489520 0.353±0.00 0.013±0.00 N/A N/A 0.065±0.00 N/A N/A N/A 0.022±0.00 0.023±0.00 N/A 0.209±0.03 N/A N/A
ENST00000493929 N/A N/A N/A 0.019±0.00 N/A 0.059±0.01 0.031±0.00 0.018±0.00 N/A N/A N/A 0.182±0.00 N/A 0.068±0.03
ENST00000622976 N/A N/A N/A N/A N/A 0.355±0.00 0.054±0.00 N/A N/A N/A N/A 0.182±0.18 N/A N/A
ENSG00000255866 ENST00000545750 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.159±0.00
ENSG00000256083 ENST00000544279 0.115±0.00 N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENSG00000256259 ENST00000536217 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.11
ENSG00000256268 ENST00000539116 0.044±0.00 N/A N/A 0.078±0.00 0.254±0.00 N/A 0.078±0.00 N/A 0.091±0.00 N/A N/A 0.060±0.00 N/A 0.340±0.00
ENST00000541391 N/A N/A N/A 0.108±0.00 N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A 0.137±0.03 0.672±0.00
ENSG00000256915 ENST00000540875 N/A N/A N/A 0.029±0.00 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000277945 ENST00000615897 N/A N/A N/A N/A 0.433±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034764 ENSMUST00000041178 0.251±0.00 N/A 0.074±0.01 N/A 0.812±0.22 N/A 0.042±0.03 0.568±0.15 3.293±2.53 0.135±0.01 N/A N/A N/A 67.324±6.70
ENSMUST00000159621 0.621±0.00 N/A N/A N/A 0.513±0.00 N/A 0.362±0.23 N/A 0.094±0.00 0.497±0.03 0.150±0.00 N/A N/A N/A
ENSMUST00000160091 N/A N/A 0.052±0.02 N/A 0.167±0.11 N/A 0.021±0.00 0.165±0.02 0.118±0.11 0.046±0.00 N/A N/A 0.035±0.00 9.167±4.56
ENSMUST00000161511 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.01 N/A N/A N/A N/A N/A
ENSMUSG00000044544 ENSMUST00000056994 0.101±0.07 0.100±0.05 0.195±0.00 0.048±0.00 0.115±0.05 0.048±0.00 0.056±0.00 0.026±0.01 0.025±0.01 0.091±0.03 0.111±0.03 0.147±0.08 0.036±0.02 3.514±1.00
ENSMUSG00000051236 ENSMUST00000092143 25.977±7.15 40.780±13.41 58.860±11.43 1.347±0.09 13.394±7.50 11.165±2.24 22.538±5.42 5.397±0.43 2.273±0.73 27.933±1.46 40.770±3.12 19.471±10.74 5.752±3.19 11.816±2.66
ENSMUST00000130950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056758 ENSMUST00000072777 1.268±0.97 0.764±0.22 0.037±0.01 2.482±1.76 0.245±0.07 1.839±0.55 0.025±0.01 0.093±0.02 3.206±3.46 0.157±0.04 0.202±0.09 1.690±0.73 2.482±2.11 N/A
ENSMUST00000159310 N/A 1.121±0.39 N/A N/A N/A 0.960±0.17 N/A 0.086±0.02 0.036±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.033±0.00 0.089±0.00 N/A
ENSMUSG00000086444 ENSMUST00000156090 N/A N/A N/A 0.460±0.00 N/A N/A N/A N/A N/A N/A 0.319±0.01 0.473±0.00 N/A 0.932±0.47
ENSMUSG00000090191 ENSMUST00000161291 0.048±0.02 0.034±0.00 0.007±0.00 0.062±0.00 0.042±0.00 0.317±0.16 N/A 0.069±0.02 0.070±0.03 0.019±0.00 0.017±0.00 0.083±0.06 0.007±0.00 0.885±0.46

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