C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group AT-hook 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159699 Hmga2-002 ENSMUSG00000056758 10090 - 10:120361275-120476469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000159699
Transcript ID Ovary Placenta
ENSMUST00000159699 2.033±0.00 0.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088X CIL_00088X_0002 VISTA 10:120251958-120853597

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000785 IEA chromatin
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003680 IDA AT DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007283 IMP spermatogenesis
GO:0008283 IMP cell proliferation
GO:0008284 IMP positive regulation of cell proliferation
GO:0008584 IMP male gonad development
GO:0021846 IMP cell proliferation in forebrain
GO:0021983 IMP pituitary gland development
GO:0030325 IMP adrenal gland development
GO:0035019 IGI somatic stem cell maintenance
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048712 IDA negative regulation of astrocyte differentiation
GO:0060123 IMP regulation of growth hormone secretion
GO:0060612 IMP adipose tissue development
GO:0060613 IGI fat pad development
GO:0090276 IMP regulation of peptide hormone secretion
GO:2000648 IMP positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354636 HMGA2-008 protein_coding Homo_sapiens 0 544
ENST00000393577 HMGA2-013 protein_coding Homo_sapiens 0 470
ENST00000393578 HMGA2-005 protein_coding Homo_sapiens 0 544
ENST00000403681 HMGA2-001 protein_coding Homo_sapiens 0 1112
ENST00000425208 HMGA2-006 protein_coding Homo_sapiens 0 544
ENST00000536545 HMGA2-003 protein_coding Homo_sapiens 0 544
ENST00000537275 HMGA2-004 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000537429 HMGA2-007 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000539662 HMGA2-012 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000541363 HMGA2-011 protein_coding Homo_sapiens 0 601
ENST00000545998 HMGA2-009 retained_intron Homo_sapiens 0 466

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