C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008EG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1636 VISTA 9606 18:27620941-28224250
GeneTranscriptPositionBiotype
ENSG00000170558 (CDH2)
cadherin 2, type 1, N-cadherin (neuronal) 		ENST00000269141 (CDH2-001) 27950966-28177446 protein_coding
ENST00000399380 (CDH2-003) 27951081-28036585 protein_coding
ENST00000413878 (CDH2-004) 28011918-28159297 protein_coding
ENST00000418492 (CDH2-002) 28005970-28045596 protein_coding
ENST00000430882 (CDH2-005) 28009804-28097229 protein_coding
ENSG00000274578 (RP11-430E17.1)
 ENST00000621223 (RP11-430E17.1-001) 28146233-28146703 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0008EG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1636 VISTA 10090 18:16260468-16863440
GeneTranscriptPositionBiotype
ENSMUSG00000024304 (Cdh2)
cadherin 2 		ENSMUST00000025166 (Cdh2-001) 16588877-16809246 protein_coding
ENSMUST00000115850 (Cdh2-003) 16589023-16670069 protein_coding
ENSMUST00000152779 (Cdh2-002) 16771397-16808462 retained_intron
ENSMUSG00000063628 (Gm7665)
predicted pseudogene 7665 		ENSMUST00000076710 (Gm7665-001) 16274648-16274944 processed_pseudogene
ENSMUSG00000082608 (Gm7670)
predicted gene 7670 		ENSMUST00000121272 (Gm7670-001) 16839317-16839957 processed_pseudogene
ENSMUSG00000085575 (Gm15485)
predicted gene 15485 		ENSMUST00000149095 (Gm15485-001) 16728733-16729678 antisense
ENSMUSG00000086095 (Gm15328)
predicted gene 15328 		ENSMUST00000144006 (Gm15328-001) 16816407-16822783 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008EG_0001ENSG00000170558ENST00000269141ENST00000399380ENST00000413878ENST00000418492ENST00000430882ENSG00000274578ENST00000621223CIL_0008EG_0002ENSMUSG00000024304ENSMUST00000025166ENSMUST00000115850ENSMUST00000152779ENSMUSG00000063628ENSMUST00000076710ENSMUSG00000082608ENSMUST00000121272ENSMUSG00000085575ENSMUST00000149095ENSMUSG00000086095ENSMUST00000144006
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008EG_0001ENSG00000170558ENST00000269141ENST00000399380ENST00000413878ENSG00000274578ENST00000621223CIL_0008EG_0002ENSMUSG00000024304ENSMUST00000025166ENSMUST00000115850ENSMUSG00000063628ENSMUST00000076710ENSMUSG00000082608ENSMUST00000121272ENSMUSG00000085575ENSMUST00000149095ENSMUSG00000086095ENSMUST00000144006
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000170558 ENST00000269141 0.103±0.00 N/A 1.598±0.00 8.187±1.15 0.042±0.00 2.370±0.00 49.755±35.79 5.074±0.13 3.440±2.97 0.372±0.00 N/A 2.600±0.59 0.169±0.00 7.074±4.27
ENST00000399380 0.030±0.00 0.479±0.00 1.341±0.00 3.714±0.00 0.602±0.00 0.403±0.00 5.031±0.00 5.647±0.00 N/A 0.076±0.00 0.056±0.00 1.320±1.20 0.261±0.19 6.998±3.83
ENST00000413878 N/A N/A N/A N/A 1.379±0.00 1.129±0.00 N/A N/A 1.507±0.00 N/A N/A N/A N/A N/A
ENST00000418492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274578 ENST00000621223 N/A N/A 1.711±0.00 1.695±1.56 N/A N/A 3.045±2.56 5.736±0.00 N/A 0.162±0.00 N/A 0.948±1.21 N/A 0.107±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024304 ENSMUST00000025166 0.965±0.34 9.891±1.52 1.278±0.12 21.209±7.41 1.404±0.34 0.557±0.19 15.100±0.58 0.658±0.18 4.686±1.53 1.082±0.14 0.118±0.07 7.774±3.24 0.581±0.27 1.875±0.19
ENSMUST00000115850 2.542±1.37 10.622±4.83 1.630±0.52 28.198±8.82 1.625±0.65 1.093±0.24 27.695±11.96 1.552±0.56 16.595±7.52 2.090±0.16 0.176±0.10 5.965±2.07 0.745±0.20 6.733±4.55
ENSMUST00000152779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000063628 ENSMUST00000076710 0.312±0.00 N/A 5.488±0.00 0.060±0.00 N/A N/A N/A N/A 0.288±0.18 N/A N/A N/A N/A N/A
ENSMUSG00000082608 ENSMUST00000121272 0.067±0.00 N/A N/A 0.015±0.00 N/A N/A N/A 0.171±0.00 N/A N/A N/A 0.073±0.00 N/A N/A
ENSMUSG00000085575 ENSMUST00000149095 N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A 0.663±0.22
ENSMUSG00000086095 ENSMUST00000144006 0.022±0.00 0.170±0.09 0.013±0.01 0.163±0.00 0.113±0.07 N/A 0.391±0.15 0.015±0.00 0.099±0.08 N/A N/A 0.162±0.15 0.016±0.00 0.135±0.00

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