C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115850 Cdh2-003 ENSMUSG00000024304 10090 - 18:16589023-16670069 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115850 2.542±1.37 10.622±4.83 1.630±0.52 28.198±8.82 1.625±0.65 1.093±0.24 27.695±11.96 1.552±0.56 16.595±7.52 2.090±0.16 0.176±0.10 5.965±2.07 0.745±0.20 6.733±4.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EG CIL_0008EG_0002 VISTA 18:16260468-16863440
CIL_0008EE CIL_0008EE_0002 VISTA 18:16409806-17015755
CIL_0006EO CIL_0006EO_0002 CGP 18:16588877-20002097

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005911 IDA cell-cell junction
GO:0005912 IDA adherens junction
GO:0005916 IDA fascia adherens
GO:0007155 IDA cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IDA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0016339 IDA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016477 IDA cell migration
GO:0030027 IDA lamellipodium
GO:0043410 IGI positive regulation of MAPK cascade
GO:0045202 IDA synapse
GO:0048514 IMP blood vessel morphogenesis
GO:0051146 IGI striated muscle cell differentiation
GO:0090090 IGI negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000024627 cdh2-001 protein_coding Danio_rerio 0 669
ENST00000269141 CDH2-001 protein_coding Homo_sapiens 0 4224
ENST00000399380 CDH2-003 protein_coding Homo_sapiens 0 4296
ENST00000413878 CDH2-004 protein_coding Homo_sapiens 0 276
ENST00000418492 CDH2-002 protein_coding Homo_sapiens 0 619
ENST00000430882 CDH2-005 protein_coding Homo_sapiens 0 486

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