C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 2, type 1, N-cadherin (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413878 CDH2-004 ENSG00000170558 9606 - 18:28011918-28159297 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverENST00000413878
Transcript ID Breast Colon Liver
ENST00000413878 1.379±0.00 1.129±0.00 1.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EG CIL_0008EG_0001 VISTA 18:27620941-28224250
CIL_0008EE CIL_0008EE_0001 VISTA 18:27783899-28388892
CIL_0006EO CIL_0006EO_0001 CGP 18:27950966-31042815

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025166 Cdh2-001 protein_coding Mus_musculus 0 462
ENSMUST00000115850 Cdh2-003 protein_coding Mus_musculus 0 276
ENSMUST00000152779 Cdh2-002 retained_intron Mus_musculus 1.4013e-45 187

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