C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008KY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1551 VISTA 9606 10:117666288-118267650
GeneTranscriptPositionBiotype
ENSG00000107560 (RAB11FIP2)
RAB11 family interacting protein 2 (class I) 		ENST00000355624 (RAB11FIP2-001) 118004916-118046603 protein_coding
ENST00000369199 (RAB11FIP2-201) 118004918-118046603 protein_coding
ENST00000476207 (RAB11FIP2-003) 118005756-118015110 processed_transcript
ENST00000483413 (RAB11FIP2-002) 118038924-118040312 retained_intron
ENSG00000234952 (RP11-328K15.1)
 ENST00000445647 (RP11-328K15.1-001) 117735313-117736407 lincRNA
ENSG00000238276 (RP11-245J24.1)
 ENST00000413810 (RP11-245J24.1-004) 118241564-118242074 retained_intron
ENST00000431695 (RP11-245J24.1-001) 118241643-118247873 lincRNA
ENST00000436430 (RP11-245J24.1-003) 118241652-118267710 lincRNA
ENST00000436975 (RP11-245J24.1-002) 118241645-118247873 lincRNA
ENSG00000263041 (RP11-355F22.1)
 ENST00000575236 (RP11-355F22.1-001) 117825903-117830518 lincRNA
ENSG00000273672 (AC022395.1)
 ENST00000618953 (AC022395.1-201) 118113310-118113418 miRNA
CIL_0008KY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1551 VISTA 10090 19:59565705-60167187
GeneTranscriptPositionBiotype
ENSMUSG00000040022 (Rab11fip2)
RAB11 family interacting protein 2 (class I) 		ENSMUST00000051996 (Rab11fip2-001) 59903696-59943364 protein_coding
ENSMUST00000170819 (Rab11fip2-002) 59906916-59943000 protein_coding
ENSMUST00000171986 (Rab11fip2-003) 59902884-59943654 protein_coding
ENSMUSG00000053117 (E330013P04Rik)
RIKEN cDNA E330013P04 gene 		ENSMUST00000065383 (E330013P04Rik-001) 60144675-60162591 lincRNA
ENSMUST00000190409 (E330013P04Rik-003) 60144704-60153089 lincRNA
ENSMUST00000190698 (E330013P04Rik-002) 60151294-60157305 lincRNA
ENSMUSG00000090965 (Gm17203)
predicted gene 17203 		ENSMUST00000164379 (Gm17203-001) 59896241-59901062 lincRNA
ENSMUSG00000091378 (Gm4219)
predicted gene 4219 		ENSMUST00000168140 (Gm4219-001) 59943722-59948398 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KY_0001ENSG00000107560ENST00000355624ENST00000369199ENST00000476207ENST00000483413ENSG00000234952ENST00000445647ENSG00000238276ENST00000413810ENST00000431695ENST00000436430ENST00000436975ENSG00000263041ENST00000575236ENSG00000273672ENST00000618953CIL_0008KY_0002ENSMUSG00000040022ENSMUST00000051996ENSMUST00000170819ENSMUST00000171986ENSMUSG00000053117ENSMUST00000065383ENSMUST00000190409ENSMUST00000190698ENSMUSG00000090965ENSMUST00000164379ENSMUSG00000091378ENSMUST00000168140
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008KY_0001ENSG00000107560ENST00000355624ENST00000369199ENST00000483413ENSG00000234952ENST00000445647ENSG00000238276ENST00000413810ENST00000431695ENST00000436430ENST00000436975ENSG00000263041ENST00000575236ENSG00000273672ENST00000618953CIL_0008KY_0002ENSMUSG00000040022ENSMUST00000051996ENSMUST00000170819ENSMUST00000171986ENSMUSG00000053117ENSMUST00000065383ENSMUST00000190409ENSMUST00000190698ENSMUSG00000090965ENSMUST00000164379ENSMUSG00000091378ENSMUST00000168140
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107560 ENST00000355624 3.239±0.00 1.696±0.00 0.738±0.00 4.712±0.21 3.318±1.06 2.244±0.00 1.496±0.58 4.334±0.00 2.211±1.31 3.719±2.05 0.574±0.31 3.296±0.27 0.959±0.15 4.373±0.31
ENST00000369199 0.848±0.00 1.673±0.00 N/A 2.631±0.44 1.020±0.00 1.547±0.00 0.459±0.13 2.044±0.00 0.906±0.00 N/A 0.914±0.00 1.286±0.42 0.806±0.00 1.095±0.00
ENST00000476207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.699±0.00 N/A
ENSG00000234952 ENST00000445647 N/A N/A N/A 0.070±0.00 0.135±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.049±0.14
ENSG00000238276 ENST00000413810 N/A N/A N/A 0.485±0.18 0.181±0.00 N/A N/A 0.604±0.00 N/A N/A N/A 0.142±0.07 N/A 2.462±0.00
ENST00000431695 N/A N/A N/A 1.674±0.00 N/A N/A N/A 0.218±0.00 N/A N/A N/A N/A N/A N/A
ENST00000436430 N/A N/A N/A N/A N/A N/A N/A N/A 0.386±0.00 N/A N/A N/A N/A N/A
ENST00000436975 N/A N/A N/A 0.293±0.00 N/A N/A N/A 0.301±0.00 N/A N/A N/A 0.608±0.00 N/A 5.172±0.00
ENSG00000263041 ENST00000575236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00
ENSG00000273672 ENST00000618953 2.951±0.00 1.581±0.00 N/A 1.166±0.00 1.400±0.00 1.764±0.00 1.472±0.00 N/A 0.510±0.00 0.834±0.00 N/A N/A N/A 0.597±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000040022 ENSMUST00000051996 N/A N/A 0.980±0.00 1.554±0.21 0.491±0.00 N/A N/A N/A N/A N/A 0.299±0.00 N/A 0.189±0.10 N/A
ENSMUST00000170819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.163±0.00 0.337±0.00 14.293±0.00
ENSMUST00000171986 1.830±1.14 N/A 3.059±0.45 6.162±0.02 2.153±0.78 0.449±0.00 1.050±0.00 1.215±0.59 0.580±0.21 2.617±0.28 0.662±0.00 2.258±0.35 0.571±0.41 4.488±1.12
ENSMUSG00000053117 ENSMUST00000065383 3.585±2.45 N/A 0.163±0.00 0.539±0.37 0.252±0.13 0.065±0.03 0.045±0.00 0.102±0.06 0.024±0.02 0.044±0.03 0.066±0.03 3.062±1.31 0.013±0.00 0.256±0.13
ENSMUST00000190409 N/A N/A N/A 0.262±0.00 N/A 0.191±0.00 0.073±0.00 N/A 0.105±0.00 0.096±0.00 0.110±0.02 N/A 0.080±0.01 0.567±0.00
ENSMUST00000190698 0.011±0.00 N/A N/A 0.040±0.00 0.059±0.02 N/A N/A 0.025±0.00 0.016±0.00 N/A 0.021±0.01 0.518±0.09 0.020±0.01 N/A
ENSMUSG00000090965 ENSMUST00000164379 0.062±0.02 0.061±0.00 0.042±0.00 0.072±0.05 0.049±0.02 0.031±0.00 0.025±0.02 0.043±0.01 0.026±0.01 0.102±0.06 0.015±0.00 0.078±0.07 0.013±0.01 0.075±0.04
ENSMUSG00000091378 ENSMUST00000168140 0.019±0.00 N/A 0.031±0.00 0.030±0.01 N/A N/A 0.051±0.01 0.021±0.00 0.019±0.01 0.036±0.01 0.013±0.00 0.043±0.02 0.007±0.00 0.045±0.00

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