C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 2 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051996 Rab11fip2-001 ENSMUSG00000040022 10090 - 19:59903696-59943364 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastMusclePlacentaENSMUST00000051996
Transcript ID Bladder Brain Breast Muscle Placenta
ENSMUST00000051996 0.980±0.00 1.554±0.21 0.491±0.00 0.299±0.00 0.189±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KI CIL_0007KI_0003 UCNEbase 19:59043463-60359839
CIL_0007XD CIL_0007XD_0002 VISTA 19:59337323-59938561
CIL_0008ND CIL_0008ND_0002 VISTA 19:59417098-60018467
CIL_0004H1 CIL_0004H1_0003 CGP 19:59458372-59943654
CIL_0008KY CIL_0008KY_0002 VISTA 19:59565705-60167187
CIL_0008MJ CIL_0008MJ_0002 VISTA 19:59715442-60316837
CIL_0004H4 CIL_0004H4_0003 CGP 19:59902884-60226697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005886 IEA plasma membrane
GO:0015031 IEA protein transport
GO:0019901 IEA protein kinase binding
GO:0030010 IEA establishment of cell polarity
GO:0035773 IMP insulin secretion involved in cellular response to glucose stimulus
GO:0042803 IEA protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045055 IMP regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355624 RAB11FIP2-001 protein_coding Homo_sapiens 0 1927
ENST00000369199 RAB11FIP2-201 protein_coding Homo_sapiens 0 1646
ENST00000483413 RAB11FIP2-002 retained_intron Homo_sapiens 0 830

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