C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 2 (class I)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355624 RAB11FIP2-001 ENSG00000107560 9606 - 10:118004916-118046603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355624
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355624 3.239±0.00 1.696±0.00 0.738±0.00 4.712±0.21 3.318±1.06 2.244±0.00 1.496±0.58 4.334±0.00 2.211±1.31 3.719±2.05 0.574±0.31 3.296±0.27 0.959±0.15 4.373±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KI CIL_0007KI_0001 UCNEbase 10:116961332-118177484
CIL_0007XD CIL_0007XD_0001 VISTA 10:117432425-118033626
CIL_0008ND CIL_0008ND_0001 VISTA 10:117530148-118131665
CIL_0004H1 CIL_0004H1_0002 CGP 10:117542444-118046603
CIL_0008KY CIL_0008KY_0001 VISTA 10:117666288-118267650
CIL_0008MJ CIL_0008MJ_0001 VISTA 10:117808289-118409839
CIL_0004H4 CIL_0004H4_0002 CGP 10:118004916-118342328

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005768 IDA endosome
GO:0005886 IEA plasma membrane
GO:0006833 TAS water transport
GO:0015031 IEA protein transport
GO:0019901 IPI protein kinase binding
GO:0030010 IMP establishment of cell polarity
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0035773 ISS insulin secretion involved in cellular response to glucose stimulus
GO:0042803 IPI protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045055 ISS regulated secretory pathway
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170819 Rab11fip2-002 protein_coding Mus_musculus 0 1934
ENSMUST00000051996 Rab11fip2-001 protein_coding Mus_musculus 0 1927
ENSMUST00000171986 Rab11fip2-003 protein_coding Mus_musculus 0 1474

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