C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008NK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs111 VISTA 9606 7:41852129-42454039
GeneTranscriptPositionBiotype
ENSG00000106571 (GLI3)
GLI family zinc finger 3 		ENST00000395925 (GLI3-001) 41960950-42237013 protein_coding
ENST00000428534 (GLI3-003) 42222800-42237870 retained_intron
ENST00000437480 (GLI3-004) 42172491-42237059 protein_coding
ENST00000448703 (GLI3-005) 42048630-42227721 protein_coding
ENST00000464291 (GLI3-006) 41972440-41977922 retained_intron
ENST00000479210 (GLI3-002) 41964082-42152453 processed_transcript
ENSG00000213721 (HMGN2P30)
high mobility group nucleosomal binding domain 2 pseudogene 30 		ENST00000423237 (HMGN2P30-001) 42113365-42113620 processed_pseudogene
ENSG00000276614 (AC005158.1)
 ENST00000615070 (AC005158.1-201) 42218409-42218514 miRNA
CIL_0008NK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs111 VISTA 10090 13:15243030-15845007
GeneTranscriptPositionBiotype
ENSMUSG00000021318 (Gli3)
GLI-Kruppel family member GLI3 		ENSMUST00000110510 (Gli3-001) 15463980-15730026 protein_coding
ENSMUST00000130065 (Gli3-003) 15463235-15715091 protein_coding
ENSMUST00000130535 (Gli3-002) 15463723-15663518 retained_intron
ENSMUST00000141194 (Gli3-004) 15463251-15641270 processed_transcript
ENSMUSG00000097684 (Gm26645)
predicted gene, 26645 		ENSMUST00000181076 (Gm26645-001) 15459980-15461295 antisense
ENSMUSG00000097806 (Gm6556)
predicted gene 6556 		ENSMUST00000181118 (Gm6556-001) 15440302-15462669 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008NK_0001ENSG00000106571ENST00000395925ENST00000428534ENST00000437480ENST00000448703ENST00000464291ENST00000479210ENSG00000213721ENST00000423237ENSG00000276614ENST00000615070CIL_0008NK_0002ENSMUSG00000021318ENSMUST00000110510ENSMUST00000130065ENSMUST00000130535ENSMUST00000141194ENSMUSG00000097684ENSMUST00000181076ENSMUSG00000097806ENSMUST00000181118
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008NK_0001ENSG00000106571ENST00000395925ENST00000448703ENST00000479210ENSG00000213721ENST00000423237ENSG00000276614ENST00000615070CIL_0008NK_0002ENSMUSG00000021318ENSMUST00000110510ENSMUST00000130065ENSMUST00000130535ENSMUSG00000097684ENSMUST00000181076ENSMUSG00000097806ENSMUST00000181118
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106571 ENST00000395925 2.729±0.00 1.039±0.00 0.364±0.00 0.497±0.21 1.615±0.00 1.009±0.89 0.350±0.28 0.361±0.27 0.390±0.00 0.543±0.44 0.416±0.00 1.460±0.02 3.047±0.56 0.892±0.46
ENST00000428534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448703 N/A N/A N/A N/A N/A 1.391±0.00 0.192±0.00 0.599±0.00 N/A N/A N/A N/A N/A N/A
ENST00000464291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479210 N/A N/A N/A N/A N/A N/A 0.078±0.00 0.028±0.00 N/A 0.813±0.00 0.276±0.00 N/A N/A 0.862±0.00
ENSG00000213721 ENST00000423237 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276614 ENST00000615070 N/A N/A N/A 1.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021318 ENSMUST00000110510 2.285±1.12 0.878±0.37 2.172±0.47 1.370±0.94 0.943±0.27 0.892±0.25 0.337±0.01 0.188±0.09 0.113±0.07 0.757±0.36 0.145±0.04 1.437±0.61 0.354±0.20 0.218±0.14
ENSMUST00000130065 0.466±0.00 N/A N/A 0.683±0.00 1.369±0.51 N/A 0.437±0.22 0.282±0.11 N/A 0.451±0.00 N/A 0.456±0.00 0.255±0.03 0.232±0.08
ENSMUST00000130535 N/A 0.440±0.06 N/A N/A 0.633±0.03 0.593±0.10 N/A 0.094±0.01 0.039±0.01 N/A N/A 0.723±0.15 N/A N/A
ENSMUST00000141194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097684 ENSMUST00000181076 0.284±0.17 N/A 0.819±0.00 0.652±0.04 0.236±0.10 0.134±0.04 0.053±0.00 0.033±0.00 0.032±0.01 0.135±0.05 0.046±0.02 0.214±0.11 0.070±0.04 0.064±0.04
ENSMUSG00000097806 ENSMUST00000181118 0.162±0.00 N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A N/A N/A N/A 0.266±0.00 0.237±0.09

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