C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2 pseudogene 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423237 HMGN2P30-001 ENSG00000213721 9606 + 7:42113365-42113620 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeENST00000423237
Transcript ID Adipose
ENST00000423237 0.195±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OL CIL_0008OL_0001 VISTA 7:41719979-42321204
CIL_0007V6 CIL_0007V6_0001 VISTA 7:41846003-42447909
CIL_0008NK CIL_0008NK_0001 VISTA 7:41852129-42454039
CIL_0009D0 CIL_0009D0_0001 VISTA 7:41913232-42514961
CIL_0007MY CIL_0007MY_0001 UCNEbase 7:42062731-42233656
CIL_0008FY CIL_0008FY_0001 VISTA 7:42092667-42693766

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 265
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 265
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 265
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 265
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 259
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 246
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 246
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 246
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 244
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 243
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 243
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 237
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 211
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 211
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 200
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 189
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 1.4013e-45 185
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 2.00386e-43 178
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 2e-39 165
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 2e-39 165
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 2e-39 165
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 9e-38 159

Loading