C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008QS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs744 VISTA 9606 18:55600648-56201591
GeneTranscriptPositionBiotype
ENSG00000196628 (TCF4)
transcription factor 4 		ENST00000354452 (TCF4-201) 55222331-55588629 protein_coding
ENST00000356073 (TCF4-002) 55222334-55588629 protein_coding
ENST00000398339 (TCF4-004) 55227936-55635954 protein_coding
ENST00000457482 (TCF4-015) 55227689-55322294 protein_coding
ENST00000537578 (TCF4-003) 55227752-55589814 protein_coding
ENST00000537856 (TCF4-013) 55227849-55401690 protein_coding
ENST00000540999 (TCF4-007) 55227690-55586105 protein_coding
ENST00000543082 (TCF4-009) 55227689-55510769 protein_coding
ENST00000544241 (TCF4-011) 55227855-55403995 protein_coding
ENST00000561831 (TCF4-016) 55227878-55302626 protein_coding
ENST00000561992 (TCF4-010) 55227864-55422492 protein_coding
ENST00000562030 (TCF4-014) 55350359-55401335 protein_coding
ENST00000562543 (TCF4-040) 55350955-55591170 protein_coding
ENST00000562607 (TCF4-035) 55275648-55351997 protein_coding
ENST00000562638 (TCF4-043) 55275662-55401712 protein_coding
ENST00000562680 (TCF4-018) 55227849-55401668 retained_intron
ENST00000562847 (TCF4-029) 55350967-55585966 protein_coding
ENST00000563686 (TCF4-017) 55264596-55464144 retained_intron
ENST00000563760 (TCF4-037) 55254504-55321805 processed_transcript
ENST00000563824 (TCF4-028) 55350364-55585437 protein_coding
ENST00000563888 (TCF4-025) 55350402-55586119 protein_coding
ENST00000564228 (TCF4-042) 55227911-55403714 protein_coding
ENST00000564343 (TCF4-023) 55350896-55591279 protein_coding
ENST00000564403 (TCF4-019) 55227936-55589803 protein_coding
ENST00000564999 (TCF4-006) 55227820-55588610 protein_coding
ENST00000565018 (TCF4-001) 55227884-55589520 protein_coding
ENST00000565124 (TCF4-020) 55585280-55635948 protein_coding
ENST00000565393 (TCF4-039) 55585317-55631362 protein_coding
ENST00000565580 (TCF4-030) 55403454-55546934 processed_transcript
ENST00000565908 (TCF4-024) 55275707-55588160 protein_coding
ENST00000566279 (TCF4-045) 55227911-55588617 protein_coding
ENST00000566286 (TCF4-041) 55227911-55588535 protein_coding
ENST00000566376 (TCF4-036) 55332067-55403506 processed_transcript
ENST00000566514 (TCF4-027) 55269884-55585769 protein_coding
ENST00000566777 (TCF4-032) 55275680-55422355 protein_coding
ENST00000567880 (TCF4-046) 55227911-55587116 protein_coding
ENST00000568147 (TCF4-026) 55350376-55585968 protein_coding
ENST00000568169 (TCF4-021) 55269924-55664787 protein_coding
ENST00000568186 (TCF4-033) 55275660-55403706 protein_coding
ENST00000568673 (TCF4-008) 55227674-55585908 protein_coding
ENST00000568740 (TCF4-005) 55227846-55589798 protein_coding
ENST00000569012 (TCF4-034) 55269875-55401551 protein_coding
ENST00000569357 (TCF4-022) 55403454-55635892 protein_coding
ENST00000570146 (TCF4-038) 55259621-55275671 protein_coding
ENST00000570177 (TCF4-012) 55227984-55402240 protein_coding
ENST00000570287 (TCF4-044) 55227911-55321986 protein_coding
ENST00000590810 (TCF4-047) 55350357-55401851 protein_coding
ENST00000616053 (TCF4-202) 55222331-55588629 protein_coding
ENSG00000206129 (CTD-2008L17.2)
 ENST00000382897 (CTD-2008L17.2-001) 56003613-56191262 lincRNA
ENST00000589754 (CTD-2008L17.2-002) 56040332-56068370 lincRNA
ENSG00000260930 (RP11-214L13.1)
 ENST00000563553 (RP11-214L13.1-001) 55881688-55920199 lincRNA
ENSG00000267172 (RP11-397A16.3)
 ENST00000585985 (RP11-397A16.3-001) 55817167-55819759 lincRNA
ENSG00000267284 (RP11-397A16.1)
 ENST00000587346 (RP11-397A16.1-001) 55721396-55784944 lincRNA
ENST00000589662 (RP11-397A16.1-002) 55721318-55788761 lincRNA
ENST00000592936 (RP11-397A16.1-003) 55721063-55759122 lincRNA
ENSG00000267325 (LINC01415)
long intergenic non-protein coding RNA 1415 		ENST00000587320 (LINC01415-001) 55776727-55781721 lincRNA
ENST00000588134 (LINC01415-002) 55779111-55780750 lincRNA
ENSG00000267327 (CTD-2008L17.1)
 ENST00000588803 (CTD-2008L17.1-001) 55998339-56023522 lincRNA
ENST00000589440 (CTD-2008L17.1-002) 55893038-56023462 lincRNA
ENSG00000267399 (RP11-456O19.5)
 ENST00000589617 (RP11-456O19.5-001) 56061109-56063078 lincRNA
ENSG00000267712 (RP11-456O19.4)
long intergenic non-protein coding RNA 1539 		ENST00000587904 (RP11-456O19.4-001) 56083362-56137517 lincRNA
ENST00000589293 (RP11-456O19.4-006) 56095921-56137483 lincRNA
ENST00000589447 (RP11-456O19.4-004) 56105106-56109824 lincRNA
ENST00000590484 (RP11-456O19.4-003) 56095990-56137349 lincRNA
ENST00000591974 (RP11-456O19.4-002) 56083356-56137536 lincRNA
ENST00000593282 (RP11-456O19.4-005) 56087237-56109824 lincRNA
ENSG00000267732 (RP11-456O19.3)
 ENST00000590589 (RP11-456O19.3-001) 56138612-56143221 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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CIL_0008QS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs744 VISTA 10090 18:68795835-69396788
GeneTranscriptPositionBiotype
ENSMUSG00000024546 (4930546C10Rik)
RIKEN cDNA 4930546C10 gene 		ENSMUST00000025428 (4930546C10Rik-201) 68944633-68950141 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QS_0001ENSG00000196628ENST00000354452ENST00000356073ENST00000398339ENST00000457482ENST00000537578ENST00000537856ENST00000540999ENST00000543082ENST00000544241ENST00000561831ENST00000561992ENST00000562030ENST00000562543ENST00000562607ENST00000562638ENST00000562680ENST00000562847ENST00000563686ENST00000563760ENST00000563824ENST00000563888ENST00000564228ENST00000564343ENST00000564403ENST00000564999ENST00000565018ENST00000565124ENST00000565393ENST00000565580ENST00000565908ENST00000566279ENST00000566286ENST00000566376ENST00000566514ENST00000566777ENST00000567880ENST00000568147ENST00000568169ENST00000568186ENST00000568673ENST00000568740ENST00000569012ENST00000569357ENST00000570146ENST00000570177ENST00000570287ENST00000590810ENST00000616053ENSG00000206129ENST00000382897ENST00000589754ENSG00000260930ENST00000563553ENSG00000267172ENST00000585985ENSG00000267284ENST00000587346ENST00000589662ENST00000592936ENSG00000267325ENST00000587320ENST00000588134ENSG00000267327ENST00000588803ENST00000589440ENSG00000267399ENST00000589617ENSG00000267712ENST00000587904ENST00000589293ENST00000589447ENST00000590484ENST00000591974ENST00000593282ENSG00000267732ENST00000590589CIL_0008QS_0002ENSMUSG00000024546ENSMUST00000025428
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008QS_0001ENSG00000196628ENST00000354452ENST00000537856ENST00000562680ENST00000563686ENST00000570287ENST00000616053ENSG00000206129ENST00000382897ENST00000589754ENSG00000260930ENST00000563553ENSG00000267172ENST00000585985ENSG00000267284ENST00000587346ENST00000589662ENST00000592936ENSG00000267325ENST00000587320ENST00000588134ENSG00000267327ENST00000588803ENST00000589440ENSG00000267399ENST00000589617ENSG00000267712ENST00000587904ENST00000591974ENST00000593282ENSG00000267732ENST00000590589CIL_0008QS_0002ENSMUSG00000024546ENSMUST00000025428
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196628 ENST00000354452 N/A 1.835±0.00 0.424±0.00 4.754±0.00 N/A 2.393±0.00 N/A N/A 8.074±0.00 N/A 0.564±0.00 3.739±1.86 N/A N/A
ENST00000356073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.314±0.00 25.078±0.00 33.153±0.00
ENST00000540999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562680 N/A N/A N/A N/A N/A N/A 3.132±0.00 1.025±0.00 N/A 6.480±0.00 N/A 6.657±0.00 N/A N/A
ENST00000562847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563686 N/A N/A 0.745±0.00 N/A 3.612±0.00 2.276±0.00 2.306±0.00 N/A 5.998±0.00 6.536±0.00 1.156±0.00 N/A N/A N/A
ENST00000563760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570287 N/A N/A 2.153±0.00 N/A N/A N/A N/A N/A N/A N/A 2.780±0.00 N/A N/A N/A
ENST00000590810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616053 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.169±0.00 N/A N/A N/A N/A
ENSG00000206129 ENST00000382897 0.015±0.00 0.015±0.00 0.023±0.00 0.026±0.00 0.034±0.00 0.044±0.04 0.013±0.00 0.044±0.00 0.127±0.00 0.009±0.00 N/A 0.086±0.04 N/A 0.085±0.04
ENST00000589754 0.066±0.00 0.415±0.00 N/A 0.151±0.00 0.107±0.00 N/A N/A 0.071±0.00 0.061±0.00 0.032±0.00 0.060±0.00 N/A N/A N/A
ENSG00000260930 ENST00000563553 N/A N/A N/A N/A 0.148±0.00 N/A N/A 0.009±0.00 N/A N/A N/A N/A 0.011±0.00 N/A
ENSG00000267172 ENST00000585985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 0.010±0.00
ENSG00000267284 ENST00000587346 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A 0.214±0.00 N/A
ENST00000589662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.695±0.13 N/A
ENST00000592936 N/A N/A 0.884±0.00 0.541±0.28 0.787±0.00 0.861±0.00 N/A 0.721±0.00 1.342±0.00 1.397±1.18 0.185±0.00 0.628±0.71 0.390±0.06 0.223±0.10
ENSG00000267325 ENST00000587320 N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A 0.072±0.01 N/A 0.020±0.01 0.067±0.04 0.049±0.00
ENST00000588134 1.631±0.00 N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A 0.514±0.00 N/A 0.097±0.04 0.163±0.00 0.077±0.01
ENSG00000267327 ENST00000588803 N/A N/A 0.202±0.00 0.116±0.05 0.128±0.00 N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589440 N/A 0.092±0.00 0.855±0.00 0.054±0.00 0.049±0.00 N/A 0.456±0.23 0.208±0.00 N/A 0.181±0.00 N/A 0.140±0.01 0.495±0.17 0.044±0.00
ENSG00000267399 ENST00000589617 N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A 0.288±0.04
ENSG00000267712 ENST00000587904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.141±0.00
ENST00000589293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591974 N/A N/A N/A 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A 1.831±0.00
ENST00000593282 N/A N/A 0.281±0.00 N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267732 ENST00000590589 N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A 0.086±0.00 N/A 0.482±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024546 ENSMUST00000025428 N/A N/A N/A N/A 0.308±0.13 N/A N/A N/A N/A N/A N/A N/A N/A 0.506±0.23

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