C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562680 TCF4-018 ENSG00000196628 9606 - 18:55227849-55401668 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLungOvaryENST00000562680
Transcript ID Heart Kidney Lung Ovary
ENST00000562680 3.132±0.00 1.025±0.00 6.480±0.00 6.657±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YZ CIL_0007YZ_0001 VISTA 18:54732639-55333995
CIL_0008CT CIL_0008CT_0001 VISTA 18:55004656-55608642
CIL_00091Y CIL_00091Y_0001 VISTA 18:55051447-55652813
CIL_0008DW CIL_0008DW_0001 VISTA 18:55122394-55723848

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078486 Tcf4-201 protein_coding Mus_musculus 0 1772
ENSMUST00000066717 Tcf4-003 protein_coding Mus_musculus 0 1772
ENSMUST00000114985 Tcf4-001 protein_coding Mus_musculus 0 1772
ENSMUST00000114980 Tcf4-004 protein_coding Mus_musculus 0 1749
ENSMUST00000114982 Tcf4-002 protein_coding Mus_musculus 0 1749
ENSMUST00000114978 Tcf4-007 protein_coding Mus_musculus 0 1495
ENSMUST00000114977 Tcf4-008 protein_coding Mus_musculus 0 1472
ENSMUST00000146908 Tcf4-012 retained_intron Mus_musculus 0 804
ENSMUST00000145918 Tcf4-014 processed_transcript Mus_musculus 0 632
ENSMUST00000136151 Tcf4-011 processed_transcript Mus_musculus 0 623
ENSMUST00000136019 Tcf4-013 retained_intron Mus_musculus 0 497
ENSMUST00000126946 Tcf4-010 processed_transcript Mus_musculus 0 440
ENSMUST00000128706 Tcf4-005 retained_intron Mus_musculus 0 281
ENSMUST00000125154 Tcf4-009 processed_transcript Mus_musculus 0 279

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