C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000918_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs509 VISTA 9606 5:51111733-51713370
GeneTranscriptPositionBiotype
ENSG00000016082 (ISL1)
ISL LIM homeobox 1
ENST00000230658 (ISL1-001) 51383391-51394738 protein_coding
ENST00000505475 (ISL1-006) 51386204-51393567 processed_transcript
ENST00000511384 (ISL1-003) 51383672-51393610 protein_coding
ENSG00000240627 (CTD-2312P21.1)
ENST00000468490 (CTD-2312P21.1-001) 51275253-51275734 processed_pseudogene
ENSG00000249338 (HMGB1P47)
high mobility group box 1 pseudogene 47
ENST00000511281 (HMGB1P47-001) 51409617-51410205 processed_pseudogene
ENSG00000251125 (CTD-2335O3.3)
ENST00000509423 (CTD-2335O3.3-001) 51451158-51462089 lincRNA
ENSG00000259663 (CTD-2314G24.2)
ENST00000558403 (CTD-2314G24.2-002) 51378575-51379675 antisense
ENST00000559112 (CTD-2314G24.2-001) 51377068-51383332 antisense
ENST00000601500 (CTD-2314G24.2-003) 51372736-51379497 antisense
CIL_000918_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs509 VISTA 10090 13:115978490-116580024
GeneTranscriptPositionBiotype
ENSMUSG00000042258 (Isl1)
ISL1 transcription factor, LIM/homeodomain
ENSMUST00000036060 (Isl1-001) 116298281-116309689 protein_coding
ENSMUST00000176044 (Isl1-002) 116299263-116309422 protein_coding
ENSMUST00000176444 (Isl1-005) 116299395-116303351 retained_intron
ENSMUST00000176812 (Isl1-004) 116303046-116306397 processed_transcript
ENSMUST00000177469 (Isl1-003) 116306891-116309685 retained_intron
ENSMUSG00000061669 (Gm6404)
predicted gene 6404
ENSMUST00000081679 (Gm6404-201) 116153781-116154134 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000918_0001ENSG00000016082ENST00000230658ENST00000505475ENST00000511384ENSG00000240627ENST00000468490ENSG00000249338ENST00000511281ENSG00000251125ENST00000509423ENSG00000259663ENST00000558403ENST00000559112ENST00000601500CIL_000918_0002ENSMUSG00000042258ENSMUST00000036060ENSMUST00000176044ENSMUST00000176444ENSMUST00000176812ENSMUST00000177469ENSMUSG00000061669ENSMUST00000081679
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000918_0001ENSG00000016082ENST00000230658ENST00000505475ENST00000511384ENSG00000240627ENST00000468490ENSG00000249338ENST00000511281ENSG00000251125ENST00000509423ENSG00000259663ENST00000558403ENST00000559112ENST00000601500CIL_000918_0002ENSMUSG00000042258ENSMUST00000036060ENSMUST00000176044ENSMUST00000176444ENSMUST00000176812ENSMUST00000177469ENSMUSG00000061669ENSMUST00000081679
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000016082 ENST00000230658 0.013±0.00 N/A N/A 0.022±0.00 N/A 0.203±0.00 N/A N/A N/A N/A N/A 0.017±0.00 3.356±0.97 1.369±0.16
ENST00000505475 0.024±0.00 0.015±0.00 N/A N/A 0.031±0.00 0.712±0.00 N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A
ENST00000511384 N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A 0.034±0.00 3.099±0.00 0.996±0.00
ENSG00000240627 ENST00000468490 0.037±0.00 0.080±0.00 N/A 0.088±0.00 0.042±0.00 N/A N/A 0.082±0.00 N/A 0.040±0.00 N/A N/A N/A N/A
ENSG00000249338 ENST00000511281 N/A N/A N/A 0.020±0.00 N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A 0.026±0.00
ENSG00000251125 ENST00000509423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00
ENSG00000259663 ENST00000558403 N/A 0.119±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A
ENST00000559112 N/A N/A N/A N/A 0.046±0.00 0.394±0.00 N/A N/A 0.048±0.00 0.029±0.00 N/A 0.084±0.00 0.716±0.17 1.107±0.18
ENST00000601500 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A 0.041±0.01 0.117±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042258 ENSMUST00000036060 0.095±0.05 2.031±0.32 1.455±0.08 7.201±5.83 0.485±0.29 1.107±0.19 0.080±0.05 0.097±0.05 0.063±0.07 0.336±0.24 0.084±0.04 0.085±0.03 0.073±0.03 0.056±0.02
ENSMUST00000176044 N/A N/A N/A 2.995±2.20 N/A N/A N/A 0.090±0.00 0.042±0.01 0.083±0.02 0.031±0.00 0.148±0.04 0.250±0.06 0.076±0.00
ENSMUST00000176444 0.223±0.14 N/A N/A N/A 1.060±0.13 N/A 0.071±0.00 0.143±0.10 0.097±0.06 0.055±0.00 0.316±0.00 0.389±0.15 0.354±0.00 0.082±0.05
ENSMUST00000176812 0.331±0.13 1.100±0.38 N/A N/A 0.873±0.05 1.608±0.42 0.063±0.02 0.305±0.00 0.168±0.02 0.199±0.00 0.281±0.00 0.546±0.22 N/A 0.095±0.05
ENSMUST00000177469 0.033±0.00 4.950±0.56 N/A N/A 0.146±0.00 2.088±0.60 N/A 0.066±0.04 0.019±0.01 0.062±0.00 0.031±0.01 0.177±0.10 0.068±0.00 0.028±0.01
ENSMUSG00000061669 ENSMUST00000081679 N/A N/A 0.063±0.00 0.040±0.00 N/A N/A N/A N/A N/A N/A 0.125±0.00 0.410±0.00 0.259±0.02 N/A

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