C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6404
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081679 Gm6404-201 ENSMUSG00000061669 10090 + 13:116153781-116154134 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainMuscleOvaryPlacentaENSMUST00000081679
Transcript ID Bladder Brain Muscle Ovary Placenta
ENSMUST00000081679 0.063±0.00 0.040±0.00 0.125±0.00 0.410±0.00 0.259±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083D CIL_00083D_0002 VISTA 13:115676803-116278241
CIL_0008KS CIL_0008KS_0002 VISTA 13:115786721-116388319
CIL_000918 CIL_000918_0002 VISTA 13:115978490-116580024

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000394665 RPL34-002 protein_coding Homo_sapiens 0 470
ENST00000394667 RPL34-001 protein_coding Homo_sapiens 0 470
ENST00000394668 RPL34-003 protein_coding Homo_sapiens 0 470
ENST00000407959 RP1-182O16.1-001 processed_pseudogene Homo_sapiens 0 392
ENST00000428810 RPL34P27-001 processed_pseudogene Homo_sapiens 0 387
ENST00000434718 RP11-569G9.7-001 processed_pseudogene Homo_sapiens 0 311
ENST00000445636 RPL34P26-001 processed_pseudogene Homo_sapiens 0 355
ENST00000450455 RPL34P1-001 processed_pseudogene Homo_sapiens 0 381
ENST00000456162 RP11-58A11.2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000465389 RPL34P34-001 processed_pseudogene Homo_sapiens 0 392
ENST00000466686 RP1-181J22.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000473394 RP11-268I9.1-001 processed_pseudogene Homo_sapiens 0 224
ENST00000473936 CTB-2L9.1-001 processed_pseudogene Homo_sapiens 0 285
ENST00000475295 RPL34P31-001 processed_pseudogene Homo_sapiens 0 335
ENST00000486062 RPL34P33-001 processed_pseudogene Homo_sapiens 0 350
ENST00000498395 RP11-841C19.1-001 processed_pseudogene Homo_sapiens 0 333
ENST00000502534 RPL34-006 protein_coding Homo_sapiens 0 470
ENST00000504231 RPL34-007 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000506397 RPL34-005 protein_coding Homo_sapiens 0 470

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