C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB2A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000003940 rab2a-001 ENSDARG00000020261 7955 - 2:21618206-21644458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000003940
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000003940 98.347±47.93 57.599±7.89 35.315±0.00 8.834±0.00 53.404±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007J7 CIL_0007J7_0003 UCNEbase 2:21562210-21628086

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022765 Rab2b-001 protein_coding Mus_musculus 0 390
ENSMUST00000022766 Tox4-001 protein_coding Mus_musculus 0.0000006 62
ENSMUST00000100631 Rab2b-004 protein_coding Mus_musculus 0 353
ENSMUST00000167116 Rab2b-002 protein_coding Mus_musculus 0 390
ENSMUST00000172488 Rab2b-008 nonsense_mediated_decay Mus_musculus 2e-36 156
ENSMUST00000174020 Rab2b-006 nonsense_mediated_decay Mus_musculus 8e-37 158

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