C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia transcription factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000004751 pbx2-201 ENSDARG00000019717 7955 + 16:51950122-51977030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleENSDART00000004751
Transcript ID Brain Liver Muscle
ENSDART00000004751 0.697±0.00 0.527±0.00 2.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RT CIL_0002RT_0001 CGP 16:51935066-51977260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007420 IMP brain development
GO:0030901 IGI midbrain development
GO:0043565 IEA sequence-specific DNA binding
GO:0048741 IGI skeletal muscle fiber development
GO:0060059 IGI embryonic retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 0 488
ENST00000461053 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000461857 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000462393 PBX2-004 retained_intron Homo_sapiens 0 424
ENST00000471428 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000473198 PBX2-004 retained_intron Homo_sapiens 0 424
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000479667 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000480009 PBX2-004 retained_intron Homo_sapiens 0 424
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000487027 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000488105 PBX2-004 retained_intron Homo_sapiens 0 424
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000491147 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000495300 PBX2-005 retained_intron Homo_sapiens 4e-16 90
ENST00000496171 PBX2-004 retained_intron Homo_sapiens 0 424
ENST00000497588 PBX2-004 retained_intron Homo_sapiens 0 424
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 0 488
ENST00000498723 PBX2-004 retained_intron Homo_sapiens 0 424

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