C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cell cycle regulation defective homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004222 Hira-001 ENSMUSG00000022702 10090 + 16:18877066-18970309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004222 9.431±4.14 6.402±0.95 9.137±1.34 28.875±4.51 6.722±2.58 7.972±2.02 3.333±0.41 5.074±2.08 6.224±3.78 7.316±3.29 2.883±0.40 12.145±4.42 6.047±2.99 1.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0005F0 CIL_0005F0_0002 CGP 16:18836584-18956247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001649 IGI osteoblast differentiation
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007369 IMP gastrulation
GO:0016568 IEA chromatin modification
GO:0042692 IGI muscle cell differentiation
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006215 hira-201 protein_coding Danio_rerio 0 815
ENSDART00000132164 hira-001 protein_coding Danio_rerio 0 815
ENST00000263208 HIRA-001 protein_coding Homo_sapiens 0 4649
ENST00000340170 HIRA-002 protein_coding Homo_sapiens 0 2593
ENST00000452818 HIRA-004 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000464189 HIRA-003 processed_transcript Homo_sapiens 0 645
ENST00000509549 C22orf39-003 nonsense_mediated_decay Homo_sapiens 0 3121

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