C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000012018 snrpa-201 ENSDARG00000018890 7955 - 18:33747015-33752007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000012018
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000012018 14.270±4.96 7.448±2.03 23.622±7.54 3.011±0.00 7.101±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZN CIL_0002ZN_0001 CGP 18:33747015-33757920

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0017069 IEA snRNA binding
GO:0019012 IEA virion
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008477 Snrpb2-001 protein_coding Mus_musculus 6e-33 147
ENSMUST00000134091 Snrpb2-003 retained_intron Mus_musculus 5e-33 147
ENST00000243563 SNRPA-001 protein_coding Homo_sapiens 0 477
ENST00000596860 SNRPA-012 retained_intron Homo_sapiens 0 217
ENST00000601393 SNRPA-006 protein_coding Homo_sapiens 0 283
ENST00000601545 SNRPA-003 protein_coding Homo_sapiens 0 331

Loading