C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000021069 rpl38-001 ENSDARG00000006413 7955 + 12:40099735-40105115 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000021069
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000021069 23.451±22.26 163.732±225.08 0.470±0.00 185.701±0.00 295.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AD CIL_0003AD_0001 CGP 12:40099735-40236087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0009790 IMP embryo development
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077915 Rpl38-002 protein_coding Mus_musculus 0 231
ENSMUST00000082092 Rpl38-004 protein_coding Mus_musculus 0 231
ENSMUST00000106599 Rpl38-003 protein_coding Mus_musculus 0 231
ENSMUST00000106602 Rpl38-001 protein_coding Mus_musculus 0 231
ENSMUST00000117356 Rpl38-ps2-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000117647 Gm7123-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000117723 Rpl38-ps1-001 processed_pseudogene Mus_musculus 0 220
ENSMUST00000118230 Gm8129-001 processed_pseudogene Mus_musculus 0 226

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