C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000033922 kcnn1a-001 ENSDARG00000091306 7955 + 2:23401869-23453652 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000033922
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000033922 19.362±11.37 0.779±0.40 0.121±0.01 0.015±0.00 1.088±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005516 IEA calmodulin binding
GO:0006813 IEA potassium ion transport
GO:0015269 IEA calcium-activated potassium channel activity
GO:0016021 IEA integral to membrane
GO:0016286 IEA small conductance calcium-activated potassium channel activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222249 KCNN1-001 protein_coding Homo_sapiens 0 798
ENST00000264773 KCNN2-201 protein_coding Homo_sapiens 0 669
ENST00000503706 KCNN2-002 protein_coding Homo_sapiens 0 372
ENST00000505491 KCNN2-004 nonsense_mediated_decay Homo_sapiens 1e-35 154
ENST00000506812 KCNN2-003 retained_intron Homo_sapiens 0 196
ENST00000507750 KCNN2-005 processed_transcript Homo_sapiens 0 375
ENST00000512097 KCNN2-001 protein_coding Homo_sapiens 0 669
ENST00000610748 KCNN2-202 protein_coding Homo_sapiens 0 375
ENST00000615435 KCNN1-201 protein_coding Homo_sapiens 0 798

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