C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610748 KCNN2-202 ENSG00000080709 9606 + 5:114362319-114496495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverLungOvaryENST00000610748
Transcript ID Breast Liver Lung Ovary
ENST00000610748 0.091±0.00 0.644±0.00 0.169±0.00 0.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UP CIL_0004UP_0001 CGP 5:113513683-114496640
CIL_0004UO CIL_0004UO_0001 CGP 5:114360945-115180546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005516 IBA:IEA calmodulin binding
GO:0005886 IBA plasma membrane
GO:0006813 NAS:IEA potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0015269 IDA:IEA calcium-activated potassium channel activity
GO:0016021 NAS:IEA integral component of membrane
GO:0016286 IBA small conductance calcium-activated potassium channel activity
GO:0042803 IPI protein homodimerization activity
GO:0043025 IBA neuronal cell body
GO:0043197 IBA dendritic spine
GO:0051393 IPI alpha-actinin binding
GO:0071805 IDA potassium ion transmembrane transport
GO:1901379 IDA regulation of potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169783 Kcnn2-202 protein_coding Mus_musculus 0 2333
ENSMUST00000066890 Kcnn2-201 protein_coding Mus_musculus 0 1570
ENSMUST00000183850 Kcnn2-001 protein_coding Mus_musculus 0 1570
ENSMUST00000184101 Kcnn2-003 retained_intron Mus_musculus 0 1426
ENSMUST00000183897 Kcnn2-004 retained_intron Mus_musculus 0 1286
ENSMUST00000167895 Kcnn2-002 processed_transcript Mus_musculus 0 773
ENSDART00000033922 kcnn1a-001 protein_coding Danio_rerio 0 375
ENSDART00000141221 KCNN2-001 protein_coding Danio_rerio 0 202

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