C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505491 KCNN2-004 ENSG00000080709 9606 + 5:114433578-114493442 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeENST00000505491
Transcript ID Adipose
ENST00000505491 0.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UP CIL_0004UP_0001 CGP 5:113513683-114496640
CIL_0004UO CIL_0004UO_0001 CGP 5:114360945-115180546

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0016286 IEA small conductance calcium-activated potassium channel activity
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169783 Kcnn2-202 protein_coding Mus_musculus 0 409
ENSMUST00000066890 Kcnn2-201 protein_coding Mus_musculus 0 405
ENSMUST00000183850 Kcnn2-001 protein_coding Mus_musculus 0 405
ENSMUST00000184101 Kcnn2-003 retained_intron Mus_musculus 0 403
ENSMUST00000167895 Kcnn2-002 processed_transcript Mus_musculus 0 401
ENSDART00000033922 kcnn1a-001 protein_coding Danio_rerio 1e-35 154

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