C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000033970 ubr4-001 ENSDARG00000009549 7955 + 23:21573133-21670989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000033970
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000033970 4.153±1.20 2.148±1.50 1.259±0.00 0.857±0.00 2.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WN CIL_0003WN_0001 CGP 23:21555455-21670989
CIL_0003WQ CIL_0003WQ_0001 CGP 23:21573096-21712014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein ligase activity
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375224 UBR4-004 protein_coding Homo_sapiens 0 1938
ENST00000375225 UBR4-002 protein_coding Homo_sapiens 0 237
ENST00000375254 UBR4-001 protein_coding Homo_sapiens 0 3843
ENST00000417040 UBR4-007 protein_coding Homo_sapiens 0 2093
ENST00000419533 UBR4-008 retained_intron Homo_sapiens 0 2185
ENST00000459947 UBR4-003 retained_intron Homo_sapiens 4.99997e-41 174
ENST00000486515 UBR4-009 processed_transcript Homo_sapiens 3e-30 135

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