C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly-U binding splicing factor b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000038487 puf60b-001 ENSDARG00000001241 7955 + 7:43876256-43887769 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyENSDART00000038487
Transcript ID Brain Heart Kidney
ENSDART00000038487 18.304±9.04 12.692±0.00 14.312±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100527 Puf60-202 protein_coding Mus_musculus 0 776
ENST00000453551 PUF60-003 protein_coding Homo_sapiens 0 732
ENST00000456095 PUF60-005 protein_coding Homo_sapiens 0 732
ENST00000524570 PUF60-010 processed_transcript Homo_sapiens 0 732
ENST00000526683 PUF60-001 protein_coding Homo_sapiens 0 732
ENST00000527584 PUF60-019 retained_intron Homo_sapiens 0 374
ENST00000527744 PUF60-025 protein_coding Homo_sapiens 0 730
ENST00000531951 PUF60-014 processed_transcript Homo_sapiens 0 616
ENST00000531995 PUF60-020 retained_intron Homo_sapiens 0 196
ENST00000532127 PUF60-015 retained_intron Homo_sapiens 0 228
ENST00000533162 PUF60-011 protein_coding Homo_sapiens 0 464
ENST00000620341 PUF60-202 protein_coding Homo_sapiens 0 732
ENST00000620953 PUF60-203 protein_coding Homo_sapiens 0 732

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