C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly-U binding splicing factor 60
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100527 Puf60-202 ENSMUSG00000002524 10090 - 15:76070184-76080946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100527 21.360±1.57 51.342±5.57 14.589±1.14 39.359±8.33 29.259±2.87 25.625±3.75 15.702±2.29 22.405±1.93 14.452±3.03 28.281±3.02 11.415±2.99 36.566±13.35 28.338±1.13 30.684±13.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0002GT CIL_0002GT_0002 CGP 15:76047158-76080946
CIL_0006FY CIL_0006FY_0003 CGP 15:76070184-76090013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0019907 IEA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030529 IEA ribonucleoprotein complex
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000038487 puf60b-001 protein_coding Danio_rerio 0 776
ENST00000313352 PUF60-004 protein_coding Homo_sapiens 0 1722
ENST00000349157 PUF60-002 protein_coding Homo_sapiens 0 1722
ENST00000453551 PUF60-003 protein_coding Homo_sapiens 0 2180
ENST00000456095 PUF60-005 protein_coding Homo_sapiens 0 2091
ENST00000524570 PUF60-010 processed_transcript Homo_sapiens 0 1489
ENST00000526151 PUF60-016 retained_intron Homo_sapiens 0 412
ENST00000526459 PUF60-024 protein_coding Homo_sapiens 0 830
ENST00000526683 PUF60-001 protein_coding Homo_sapiens 0 2278
ENST00000527197 PUF60-006 protein_coding Homo_sapiens 0 1670
ENST00000527584 PUF60-019 retained_intron Homo_sapiens 0 671
ENST00000527744 PUF60-025 protein_coding Homo_sapiens 0 1288
ENST00000528320 PUF60-018 retained_intron Homo_sapiens 0 375
ENST00000529999 PUF60-012 protein_coding Homo_sapiens 0 375
ENST00000531897 PUF60-013 protein_coding Homo_sapiens 0 375
ENST00000531951 PUF60-014 processed_transcript Homo_sapiens 0 1035
ENST00000531995 PUF60-020 retained_intron Homo_sapiens 0 243
ENST00000532127 PUF60-015 retained_intron Homo_sapiens 0 514
ENST00000532884 PUF60-023 protein_coding Homo_sapiens 0 636
ENST00000533162 PUF60-011 protein_coding Homo_sapiens 0 761
ENST00000533362 PUF60-017 processed_transcript Homo_sapiens 0 366
ENST00000612237 PUF60-201 protein_coding Homo_sapiens 0 1722
ENST00000620341 PUF60-202 protein_coding Homo_sapiens 0 2206
ENST00000620953 PUF60-203 protein_coding Homo_sapiens 0 2091

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