C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly-U binding splicing factor 60KDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453551 PUF60-003 ENSG00000179950 9606 - 8:143816377-143829026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverOvaryENST00000453551
Transcript ID Brain Colon Kidney Liver Ovary
ENST00000453551 3.236±0.00 1.998±0.00 3.116±0.00 2.649±0.00 13.345±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0002GT CIL_0002GT_0001 CGP 8:143790920-143829859
CIL_0006FY CIL_0006FY_0002 CGP 8:143816344-143840974

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006915 IEA apoptotic process
GO:0008380 IEA RNA splicing
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0030529 IEA ribonucleoprotein complex
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100527 Puf60-202 protein_coding Mus_musculus 0 2180
ENSMUST00000002599 Puf60-201 protein_coding Mus_musculus 0 1722
ENSDART00000038487 puf60b-001 protein_coding Danio_rerio 0 732
ENSDART00000056645 puf60a-201 protein_coding Danio_rerio 0 281
ENSDART00000144613 puf60a-001 protein_coding Danio_rerio 0 281

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