C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyperpolarization activated cyclic nucleotide-gated potassium channel 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000039325 hcn3-001 ENSDARG00000027192 7955 + 19:9808711-9830649 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENSDART00000039325
Transcript ID Kidney
ENSDART00000039325 0.583±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005887 IBA integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IBA regulation of ion transmembrane transport
GO:0042391 IBA regulation of membrane potential
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029686 Hcn3-001 protein_coding Mus_musculus 0 586
ENSMUST00000034889 Hcn4-201 protein_coding Mus_musculus 0 854
ENSMUST00000127654 Hcn3-004 retained_intron Mus_musculus 0 248
ENSMUST00000132156 Hcn3-003 retained_intron Mus_musculus 0 315
ENST00000251287 HCN2-001 protein_coding Homo_sapiens 0 702
ENST00000261917 HCN4-001 protein_coding Homo_sapiens 0 765
ENST00000368358 HCN3-001 protein_coding Homo_sapiens 0 726
ENST00000467204 HCN3-003 processed_transcript Homo_sapiens 0 270
ENST00000496230 HCN3-002 processed_transcript Homo_sapiens 0 333
ENST00000568218 RP13-395E19.2-001 processed_pseudogene Homo_sapiens 0 599
ENST00000569415 RP11-261B23.1-001 processed_pseudogene Homo_sapiens 0 582
ENST00000572822 HCN3-002 processed_transcript Homo_sapiens 0 333
ENST00000575670 HCN3-001 protein_coding Homo_sapiens 0 726
ENST00000576844 HCN3-003 processed_transcript Homo_sapiens 0 270

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