C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: regulatory factor X, 3 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000041236 rfx3-201 ENSDARG00000014550 7955 - 10:587499-628881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000041236
Transcript ID Brain Heart Kidney Muscle
ENSDART00000041236 3.697±3.89 0.468±0.08 0.601±0.00 0.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F0 CIL_0000F0_0001 CGP 10:587499-677490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002444 Rfx2-201 protein_coding Mus_musculus 0 579
ENSMUST00000086801 Rfx2-202 protein_coding Mus_musculus 0 579
ENSMUST00000173161 Rfx3-002 retained_intron Mus_musculus 0.000000000000002 90
ENSMUST00000174850 Rfx3-001 protein_coding Mus_musculus 0.000000000003 79
ENST00000303657 RFX2-002 protein_coding Homo_sapiens 0 577
ENST00000359161 RFX2-004 protein_coding Homo_sapiens 0 577
ENST00000382004 RFX3-006 protein_coding Homo_sapiens 0.000000000000005 90
ENST00000449190 RFX3-004 protein_coding Homo_sapiens 4e-16 90
ENST00000590778 RFX2-020 retained_intron Homo_sapiens 5.00264e-43 178
ENST00000592546 RFX2-003 protein_coding Homo_sapiens 0 577
ENST00000617270 RFX3-202 protein_coding Homo_sapiens 0.000000000000005 90

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