C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 2 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086801 Rfx2-202 ENSMUSG00000024206 10090 - 17:56775897-56831008 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086801
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086801 6.845±3.10 3.881±0.59 3.143±1.33 0.772±0.24 3.810±1.39 4.874±0.45 1.200±0.37 1.331±0.48 3.537±3.43 6.903±0.93 0.894±0.20 6.201±1.93 0.892±0.38 36.149±12.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GQ CIL_0005GQ_0003 CGP 17:56775897-56874447

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041236 rfx3-201 protein_coding Danio_rerio 0 579
ENSDART00000148382 rfx1b-001 protein_coding Danio_rerio 1e-26 126
ENST00000254325 HGNC:9982-001 protein_coding Homo_sapiens 0 632
ENST00000303657 RFX2-002 protein_coding Homo_sapiens 0 1578
ENST00000359161 RFX2-004 protein_coding Homo_sapiens 0 1578
ENST00000588520 HGNC:9982-007 retained_intron Homo_sapiens 0 235
ENST00000589340 RFX2-019 protein_coding Homo_sapiens 0 198
ENST00000589742 RFX2-018 protein_coding Homo_sapiens 3e-31 139
ENST00000590778 RFX2-020 retained_intron Homo_sapiens 0 327
ENST00000592546 RFX2-003 protein_coding Homo_sapiens 0 2143
ENST00000593241 RFX2-006 protein_coding Homo_sapiens 7e-37 158

Loading