Institute of Cardiovascular Regeneration Webtool Repository

CIL_0007M9_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
MEF2C	UCNEbase	9606	5:88540043-88678047
Gene	Transcript	Position	Biotype
ENSG00000250705 (CTC-470C15.1)	ENST00000509149 (CTC-470C15.1-001)	88602780-88603117	processed_pseudogene

CIL_0007M9_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
MEF2C	UCNEbase	9606	5:88678048-89377026
Gene	Transcript	Position	Biotype
ENSG00000250377 (CTC-467M3.3)	ENST00000508719 (CTC-467M3.3-001)	88692645-88693972	lincRNA

CIL_0007M9_0003 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0007M9_0003 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007M9_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000245864' => null,
		'ENSG00000250705' => null,
		'ENSG00000273878' => 'microRNA 9-2',
		'ENSG00000081189' => 'myocyte enhancer factor 2C',
		'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
		'ENSG00000248309' => 'MEF2C antisense RNA 1',
		'ENSG00000250377' => null,
		'ENSG00000250555' => null,
		'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
		'ENSDARG00000081362' => 'dre-mir-9-5',
		'ENSDARG00000095715' => 'si:ch211-202e12.3',
		'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
		'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
		'ENSMUSG00000065424' => 'microRNA 9-2',
		'ENSMUSG00000097265' => 'predicted gene, 26803'
	),
	'gene_name_arr' => array(
		'ENSG00000245864' => 'CTC-467M3.1',
		'ENSG00000250705' => 'CTC-470C15.1',
		'ENSG00000273878' => 'MIR9-2',
		'ENSG00000081189' => 'MEF2C',
		'ENSG00000245526' => 'LINC00461',
		'ENSG00000248309' => 'MEF2C-AS1',
		'ENSG00000250377' => 'CTC-467M3.3',
		'ENSG00000250555' => 'CTC-467M3.2',
		'ENSDARG00000009418' => 'mef2cb',
		'ENSDARG00000081362' => 'dre-mir-9-5',
		'ENSDARG00000095715' => 'si:ch211-202e12.3',
		'ENSMUSG00000005583' => 'Mef2c',
		'ENSMUSG00000050334' => 'C130071C03Rik',
		'ENSMUSG00000065424' => 'Mir9-2',
		'ENSMUSG00000097265' => 'Gm26803'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 13 => 'Bladder',
		(int) 20 => 'Brain',
		(int) 33 => 'Breast',
		(int) 38 => 'Colon',
		(int) 47 => 'Heart',
		(int) 56 => 'Kidney',
		(int) 66 => 'Liver',
		(int) 75 => 'Lung',
		(int) 80 => 'Muscle',
		(int) 92 => 'Ovary',
		(int) 99 => 'Placenta',
		(int) 108 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 79,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000510274' => array(
			'start' => '88676218',
			'end' => '88722831',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'CTC-467M3.1-001'
		),
		'ENST00000509149' => array(
			'start' => '88602780',
			'end' => '88603117',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'CTC-470C15.1-001'
		),
		'ENST00000384838' => array(
			'start' => '88666853',
			'end' => '88666939',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR9-2-201'
		),
		'ENST00000340208' => array(
			'start' => '88718158',
			'end' => '88904082',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-005'
		),
		'ENST00000424173' => array(
			'start' => '88718222',
			'end' => '88904105',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-004'
		),
		'ENST00000437473' => array(
			'start' => '88720349',
			'end' => '88883233',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-003'
		),
		'ENST00000502831' => array(
			'start' => '88761292',
			'end' => '88904105',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-007'
		),
		'ENST00000502983' => array(
			'start' => '88761200',
			'end' => '88884568',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-010'
		),
		'ENST00000503075' => array(
			'start' => '88761325',
			'end' => '88883227',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-013'
		),
		'ENST00000503554' => array(
			'start' => '88731896',
			'end' => '88785542',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2C-019'
		),
		'ENST00000503955' => array(
			'start' => '88887392',
			'end' => '88904052',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-008'
		),
		'ENST00000504921' => array(
			'start' => '88718242',
			'end' => '88823927',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-201'
		),
		'ENST00000506554' => array(
			'start' => '88720844',
			'end' => '88883172',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-025'
		),
		'ENST00000506716' => array(
			'start' => '88731852',
			'end' => '88824340',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-016'
		),
		'ENST00000507984' => array(
			'start' => '88761023',
			'end' => '88827158',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-015'
		),
		'ENST00000508569' => array(
			'start' => '88722574',
			'end' => '88883159',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-022'
		),
		'ENST00000508610' => array(
			'start' => '88761209',
			'end' => '88877977',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-014'
		),
		'ENST00000509349' => array(
			'start' => '88823861',
			'end' => '88883224',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2C-011'
		),
		'ENST00000509373' => array(
			'start' => '88804770',
			'end' => '88824275',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-017'
		),
		'ENST00000510942' => array(
			'start' => '88720825',
			'end' => '88883172',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-024'
		),
		'ENST00000510980' => array(
			'start' => '88722837',
			'end' => '88729519',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-021'
		),
		'ENST00000511086' => array(
			'start' => '88804526',
			'end' => '88883174',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-018'
		),
		'ENST00000513252' => array(
			'start' => '88731807',
			'end' => '88883147',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-012'
		),
		'ENST00000514015' => array(
			'start' => '88722595',
			'end' => '88883224',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-023'
		),
		'ENST00000514028' => array(
			'start' => '88720349',
			'end' => '88883214',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-001'
		),
		'ENST00000515093' => array(
			'start' => '88823796',
			'end' => '88889324',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2C-006'
		),
		'ENST00000515715' => array(
			'start' => '88731444',
			'end' => '88749124',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-020'
		),
		'ENST00000500197' => array(
			'start' => '88664445',
			'end' => '88673339',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-003'
		),
		'ENST00000502301' => array(
			'start' => '88540728',
			'end' => '88678445',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-010'
		),
		'ENST00000504246' => array(
			'start' => '88666320',
			'end' => '88676298',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-002'
		),
		'ENST00000505030' => array(
			'start' => '88664445',
			'end' => '88673325',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-005'
		),
		'ENST00000506014' => array(
			'start' => '88540727',
			'end' => '88678445',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-009'
		),
		'ENST00000506664' => array(
			'start' => '88540511',
			'end' => '88611776',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-012'
		),
		'ENST00000506978' => array(
			'start' => '88507546',
			'end' => '88684808',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-013'
		),
		'ENST00000508885' => array(
			'start' => '88540831',
			'end' => '88659835',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-011'
		),
		'ENST00000509265' => array(
			'start' => '88667353',
			'end' => '88684823',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-016'
		),
		'ENST00000509405' => array(
			'start' => '88540847',
			'end' => '88684805',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-014'
		),
		'ENST00000509783' => array(
			'start' => '88666879',
			'end' => '88684770',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-015'
		),
		'ENST00000511014' => array(
			'start' => '88664446',
			'end' => '88684936',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-001'
		),
		'ENST00000513026' => array(
			'start' => '88667274',
			'end' => '88678448',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-008'
		),
		'ENST00000513805' => array(
			'start' => '88540884',
			'end' => '88684825',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-007'
		),
		'ENST00000513893' => array(
			'start' => '88667342',
			'end' => '88691041',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-006'
		),
		'ENST00000515885' => array(
			'start' => '88666954',
			'end' => '88672696',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-004'
		),
		'ENST00000506665' => array(
			'start' => '88892257',
			'end' => '88965896',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-011'
		),
		'ENST00000508521' => array(
			'start' => '88943087',
			'end' => '89075331',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-013'
		),
		'ENST00000508718' => array(
			'start' => '88889454',
			'end' => '88943298',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-009'
		),
		'ENST00000508742' => array(
			'start' => '89418807',
			'end' => '89466398',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-014'
		),
		'ENST00000509179' => array(
			'start' => '88889374',
			'end' => '88965872',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-002'
		),
		'ENST00000511100' => array(
			'start' => '88883328',
			'end' => '89032293',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-004'
		),
		'ENST00000511876' => array(
			'start' => '88889451',
			'end' => '88905270',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-008'
		),
		'ENST00000512585' => array(
			'start' => '88883417',
			'end' => '89305171',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-006'
		),
		'ENST00000513704' => array(
			'start' => '88889308',
			'end' => '88943343',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-007'
		),
		'ENST00000514011' => array(
			'start' => '88889335',
			'end' => '88967279',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-001'
		),
		'ENST00000514092' => array(
			'start' => '88889445',
			'end' => '89465982',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-003'
		),
		'ENST00000514158' => array(
			'start' => '88889460',
			'end' => '88941370',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-010'
		),
		'ENST00000514571' => array(
			'start' => '88965875',
			'end' => '89168668',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-012'
		),
		'ENST00000514794' => array(
			'start' => '88883399',
			'end' => '88943214',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-005'
		),
		'ENST00000508719' => array(
			'start' => '88692645',
			'end' => '88693972',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTC-467M3.3-001'
		),
		'ENST00000511000' => array(
			'start' => '88692651',
			'end' => '88692859',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'CTC-467M3.2-001'
		),
		'ENSDART00000044083' => array(
			'start' => '49966161',
			'end' => '50042936',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mef2cb-201'
		),
		'ENSDART00000135911' => array(
			'start' => '49966176',
			'end' => '50043000',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mef2cb-001'
		),
		'ENSDART00000138702' => array(
			'start' => '50037192',
			'end' => '50042987',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'mef2cb-002'
		),
		'ENSDART00000117420' => array(
			'start' => '49952889',
			'end' => '49952975',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'dre-mir-9-5.1-201'
		),
		'ENSDART00000140395' => array(
			'start' => '49892948',
			'end' => '49958412',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-001'
		),
		'ENSDART00000141802' => array(
			'start' => '49893067',
			'end' => '49958068',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-003'
		),
		'ENSDART00000144252' => array(
			'start' => '49892946',
			'end' => '49955486',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-002'
		),
		'ENSDART00000153239' => array(
			'start' => '49892948',
			'end' => '49958038',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-004'
		),
		'ENSMUST00000005722' => array(
			'start' => '83504034',
			'end' => '83667079',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2c-201'
		),
		'ENSMUST00000163888' => array(
			'start' => '83504034',
			'end' => '83667079',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2c-202'
		),
		'ENSMUST00000185052' => array(
			'start' => '83573607',
			'end' => '83664472',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2c-001'
		),
		'ENSMUST00000052354' => array(
			'start' => '83738881',
			'end' => '83741307',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-201'
		),
		'ENSMUST00000131907' => array(
			'start' => '83721381',
			'end' => '83741308',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-001'
		),
		'ENSMUST00000182701' => array(
			'start' => '83732566',
			'end' => '83735521',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-003'
		),
		'ENSMUST00000182788' => array(
			'start' => '83728106',
			'end' => '83735669',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-002'
		),
		'ENSMUST00000185281' => array(
			'start' => '83721381',
			'end' => '83872680',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-005'
		),
		'ENSMUST00000187663' => array(
			'start' => '83738863',
			'end' => '83884194',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-006'
		),
		'ENSMUST00000083490' => array(
			'start' => '83738806',
			'end' => '83738892',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir9-2-201'
		),
		'ENSMUST00000181705' => array(
			'start' => '83723442',
			'end' => '83729582',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Gm26803-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007M9_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007M9_0001' => array(
		'genes_in_region' => array(
			'ENSG00000250705' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart'
		)
	),
	'CIL_0007M9_0002' => array(
		'genes_in_region' => array(
			'ENSG00000250377' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Testis',
			(int) 2 => 'Bladder',
			(int) 3 => 'Adipose',
			(int) 4 => 'Adrenal',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Heart',
			(int) 8 => 'Kidney',
			(int) 9 => 'Liver',
			(int) 10 => 'Lung',
			(int) 11 => 'Muscle',
			(int) 12 => 'Ovary',
			(int) 13 => 'Placenta',
			(int) 14 => 'Testis',
			(int) 15 => 'Placenta',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adipose',
			(int) 24 => 'Adrenal',
			(int) 25 => 'Bladder',
			(int) 26 => 'Breast',
			(int) 27 => 'Colon',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Colon',
			(int) 36 => 'Colon',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Adrenal',
			(int) 41 => 'Brain',
			(int) 42 => 'Testis'
		)
	),
	'CIL_0007M9_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000009418' => array(
				[maximum depth reached]
			),
			'ENSDARG00000095715' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Muscle',
			(int) 3 => 'Heart',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Brain',
			(int) 10 => 'Muscle',
			(int) 11 => 'Brain',
			(int) 12 => 'Muscle'
		)
	),
	'CIL_0007M9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000005583' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000050334' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000097265' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Adipose',
			(int) 25 => 'Adrenal',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Colon',
			(int) 29 => 'Heart',
			(int) 30 => 'Kidney',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis',
			(int) 36 => 'Bladder',
			(int) 37 => 'Brain',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Placenta',
			(int) 45 => 'Bladder',
			(int) 46 => 'Brain',
			(int) 47 => 'Colon',
			(int) 48 => 'Placenta',
			(int) 49 => 'Kidney',
			(int) 50 => 'Muscle',
			(int) 51 => 'Bladder',
			(int) 52 => 'Brain',
			(int) 53 => 'Kidney',
			(int) 54 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000245864' => null,
	'ENSG00000250705' => null,
	'ENSG00000273878' => 'microRNA 9-2',
	'ENSG00000081189' => 'myocyte enhancer factor 2C',
	'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
	'ENSG00000248309' => 'MEF2C antisense RNA 1',
	'ENSG00000250377' => null,
	'ENSG00000250555' => null,
	'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
	'ENSDARG00000081362' => 'dre-mir-9-5',
	'ENSDARG00000095715' => 'si:ch211-202e12.3',
	'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
	'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
	'ENSMUSG00000065424' => 'microRNA 9-2',
	'ENSMUSG00000097265' => 'predicted gene, 26803'
)
$gene_name_arr = array(
	'ENSG00000245864' => 'CTC-467M3.1',
	'ENSG00000250705' => 'CTC-470C15.1',
	'ENSG00000273878' => 'MIR9-2',
	'ENSG00000081189' => 'MEF2C',
	'ENSG00000245526' => 'LINC00461',
	'ENSG00000248309' => 'MEF2C-AS1',
	'ENSG00000250377' => 'CTC-467M3.3',
	'ENSG00000250555' => 'CTC-467M3.2',
	'ENSDARG00000009418' => 'mef2cb',
	'ENSDARG00000081362' => 'dre-mir-9-5',
	'ENSDARG00000095715' => 'si:ch211-202e12.3',
	'ENSMUSG00000005583' => 'Mef2c',
	'ENSMUSG00000050334' => 'C130071C03Rik',
	'ENSMUSG00000065424' => 'Mir9-2',
	'ENSMUSG00000097265' => 'Gm26803'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0001',
			'tax_id' => '9606',
			'chromosome' => '5',
			'seq_start' => '88540043',
			'seq_end' => '88678047',
			'region_length' => '138004',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0002',
			'tax_id' => '9606',
			'chromosome' => '5',
			'seq_start' => '88678048',
			'seq_end' => '89377026',
			'region_length' => '698978',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0003',
			'tax_id' => '10090',
			'chromosome' => '13',
			'seq_start' => '82972882',
			'seq_end' => '82974629',
			'region_length' => '1747',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0004',
			'tax_id' => '7955',
			'chromosome' => '5',
			'seq_start' => '49916006',
			'seq_end' => '50254911',
			'region_length' => '338905',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0005',
			'tax_id' => '10090',
			'chromosome' => '13',
			'seq_start' => '83484793',
			'seq_end' => '83885112',
			'region_length' => '400319',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 13 => 'Bladder',
	(int) 20 => 'Brain',
	(int) 33 => 'Breast',
	(int) 38 => 'Colon',
	(int) 47 => 'Heart',
	(int) 56 => 'Kidney',
	(int) 66 => 'Liver',
	(int) 75 => 'Lung',
	(int) 80 => 'Muscle',
	(int) 92 => 'Ovary',
	(int) 99 => 'Placenta',
	(int) 108 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 79
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000510274' => array(
		'start' => '88676218',
		'end' => '88722831',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'CTC-467M3.1-001'
	),
	'ENST00000509149' => array(
		'start' => '88602780',
		'end' => '88603117',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'CTC-470C15.1-001'
	),
	'ENST00000384838' => array(
		'start' => '88666853',
		'end' => '88666939',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR9-2-201'
	),
	'ENST00000340208' => array(
		'start' => '88718158',
		'end' => '88904082',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-005'
	),
	'ENST00000424173' => array(
		'start' => '88718222',
		'end' => '88904105',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-004'
	),
	'ENST00000437473' => array(
		'start' => '88720349',
		'end' => '88883233',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-003'
	),
	'ENST00000502831' => array(
		'start' => '88761292',
		'end' => '88904105',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-007'
	),
	'ENST00000502983' => array(
		'start' => '88761200',
		'end' => '88884568',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-010'
	),
	'ENST00000503075' => array(
		'start' => '88761325',
		'end' => '88883227',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-013'
	),
	'ENST00000503554' => array(
		'start' => '88731896',
		'end' => '88785542',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2C-019'
	),
	'ENST00000503955' => array(
		'start' => '88887392',
		'end' => '88904052',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-008'
	),
	'ENST00000504921' => array(
		'start' => '88718242',
		'end' => '88823927',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-201'
	),
	'ENST00000506554' => array(
		'start' => '88720844',
		'end' => '88883172',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-025'
	),
	'ENST00000506716' => array(
		'start' => '88731852',
		'end' => '88824340',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-016'
	),
	'ENST00000507984' => array(
		'start' => '88761023',
		'end' => '88827158',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-015'
	),
	'ENST00000508569' => array(
		'start' => '88722574',
		'end' => '88883159',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-022'
	),
	'ENST00000508610' => array(
		'start' => '88761209',
		'end' => '88877977',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-014'
	),
	'ENST00000509349' => array(
		'start' => '88823861',
		'end' => '88883224',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2C-011'
	),
	'ENST00000509373' => array(
		'start' => '88804770',
		'end' => '88824275',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-017'
	),
	'ENST00000510942' => array(
		'start' => '88720825',
		'end' => '88883172',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-024'
	),
	'ENST00000510980' => array(
		'start' => '88722837',
		'end' => '88729519',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-021'
	),
	'ENST00000511086' => array(
		'start' => '88804526',
		'end' => '88883174',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-018'
	),
	'ENST00000513252' => array(
		'start' => '88731807',
		'end' => '88883147',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-012'
	),
	'ENST00000514015' => array(
		'start' => '88722595',
		'end' => '88883224',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-023'
	),
	'ENST00000514028' => array(
		'start' => '88720349',
		'end' => '88883214',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-001'
	),
	'ENST00000515093' => array(
		'start' => '88823796',
		'end' => '88889324',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2C-006'
	),
	'ENST00000515715' => array(
		'start' => '88731444',
		'end' => '88749124',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-020'
	),
	'ENST00000500197' => array(
		'start' => '88664445',
		'end' => '88673339',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-003'
	),
	'ENST00000502301' => array(
		'start' => '88540728',
		'end' => '88678445',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-010'
	),
	'ENST00000504246' => array(
		'start' => '88666320',
		'end' => '88676298',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-002'
	),
	'ENST00000505030' => array(
		'start' => '88664445',
		'end' => '88673325',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-005'
	),
	'ENST00000506014' => array(
		'start' => '88540727',
		'end' => '88678445',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-009'
	),
	'ENST00000506664' => array(
		'start' => '88540511',
		'end' => '88611776',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-012'
	),
	'ENST00000506978' => array(
		'start' => '88507546',
		'end' => '88684808',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-013'
	),
	'ENST00000508885' => array(
		'start' => '88540831',
		'end' => '88659835',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-011'
	),
	'ENST00000509265' => array(
		'start' => '88667353',
		'end' => '88684823',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-016'
	),
	'ENST00000509405' => array(
		'start' => '88540847',
		'end' => '88684805',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-014'
	),
	'ENST00000509783' => array(
		'start' => '88666879',
		'end' => '88684770',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-015'
	),
	'ENST00000511014' => array(
		'start' => '88664446',
		'end' => '88684936',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-001'
	),
	'ENST00000513026' => array(
		'start' => '88667274',
		'end' => '88678448',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-008'
	),
	'ENST00000513805' => array(
		'start' => '88540884',
		'end' => '88684825',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-007'
	),
	'ENST00000513893' => array(
		'start' => '88667342',
		'end' => '88691041',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-006'
	),
	'ENST00000515885' => array(
		'start' => '88666954',
		'end' => '88672696',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-004'
	),
	'ENST00000506665' => array(
		'start' => '88892257',
		'end' => '88965896',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-011'
	),
	'ENST00000508521' => array(
		'start' => '88943087',
		'end' => '89075331',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-013'
	),
	'ENST00000508718' => array(
		'start' => '88889454',
		'end' => '88943298',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-009'
	),
	'ENST00000508742' => array(
		'start' => '89418807',
		'end' => '89466398',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-014'
	),
	'ENST00000509179' => array(
		'start' => '88889374',
		'end' => '88965872',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-002'
	),
	'ENST00000511100' => array(
		'start' => '88883328',
		'end' => '89032293',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-004'
	),
	'ENST00000511876' => array(
		'start' => '88889451',
		'end' => '88905270',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-008'
	),
	'ENST00000512585' => array(
		'start' => '88883417',
		'end' => '89305171',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-006'
	),
	'ENST00000513704' => array(
		'start' => '88889308',
		'end' => '88943343',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-007'
	),
	'ENST00000514011' => array(
		'start' => '88889335',
		'end' => '88967279',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-001'
	),
	'ENST00000514092' => array(
		'start' => '88889445',
		'end' => '89465982',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-003'
	),
	'ENST00000514158' => array(
		'start' => '88889460',
		'end' => '88941370',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-010'
	),
	'ENST00000514571' => array(
		'start' => '88965875',
		'end' => '89168668',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-012'
	),
	'ENST00000514794' => array(
		'start' => '88883399',
		'end' => '88943214',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-005'
	),
	'ENST00000508719' => array(
		'start' => '88692645',
		'end' => '88693972',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTC-467M3.3-001'
	),
	'ENST00000511000' => array(
		'start' => '88692651',
		'end' => '88692859',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'CTC-467M3.2-001'
	),
	'ENSDART00000044083' => array(
		'start' => '49966161',
		'end' => '50042936',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mef2cb-201'
	),
	'ENSDART00000135911' => array(
		'start' => '49966176',
		'end' => '50043000',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mef2cb-001'
	),
	'ENSDART00000138702' => array(
		'start' => '50037192',
		'end' => '50042987',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'mef2cb-002'
	),
	'ENSDART00000117420' => array(
		'start' => '49952889',
		'end' => '49952975',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'dre-mir-9-5.1-201'
	),
	'ENSDART00000140395' => array(
		'start' => '49892948',
		'end' => '49958412',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-001'
	),
	'ENSDART00000141802' => array(
		'start' => '49893067',
		'end' => '49958068',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-003'
	),
	'ENSDART00000144252' => array(
		'start' => '49892946',
		'end' => '49955486',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-002'
	),
	'ENSDART00000153239' => array(
		'start' => '49892948',
		'end' => '49958038',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-004'
	),
	'ENSMUST00000005722' => array(
		'start' => '83504034',
		'end' => '83667079',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2c-201'
	),
	'ENSMUST00000163888' => array(
		'start' => '83504034',
		'end' => '83667079',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2c-202'
	),
	'ENSMUST00000185052' => array(
		'start' => '83573607',
		'end' => '83664472',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2c-001'
	),
	'ENSMUST00000052354' => array(
		'start' => '83738881',
		'end' => '83741307',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-201'
	),
	'ENSMUST00000131907' => array(
		'start' => '83721381',
		'end' => '83741308',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-001'
	),
	'ENSMUST00000182701' => array(
		'start' => '83732566',
		'end' => '83735521',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-003'
	),
	'ENSMUST00000182788' => array(
		'start' => '83728106',
		'end' => '83735669',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-002'
	),
	'ENSMUST00000185281' => array(
		'start' => '83721381',
		'end' => '83872680',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-005'
	),
	'ENSMUST00000187663' => array(
		'start' => '83738863',
		'end' => '83884194',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-006'
	),
	'ENSMUST00000083490' => array(
		'start' => '83738806',
		'end' => '83738892',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir9-2-201'
	),
	'ENSMUST00000181705' => array(
		'start' => '83723442',
		'end' => '83729582',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Gm26803-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007M9_0001' => array(
		'genes_in_region' => array(
			'ENSG00000250705' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart'
		)
	),
	'CIL_0007M9_0002' => array(
		'genes_in_region' => array(
			'ENSG00000250377' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Testis',
			(int) 2 => 'Bladder',
			(int) 3 => 'Adipose',
			(int) 4 => 'Adrenal',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Heart',
			(int) 8 => 'Kidney',
			(int) 9 => 'Liver',
			(int) 10 => 'Lung',
			(int) 11 => 'Muscle',
			(int) 12 => 'Ovary',
			(int) 13 => 'Placenta',
			(int) 14 => 'Testis',
			(int) 15 => 'Placenta',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adipose',
			(int) 24 => 'Adrenal',
			(int) 25 => 'Bladder',
			(int) 26 => 'Breast',
			(int) 27 => 'Colon',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Colon',
			(int) 36 => 'Colon',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Adrenal',
			(int) 41 => 'Brain',
			(int) 42 => 'Testis'
		)
	),
	'CIL_0007M9_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000009418' => array(
				[maximum depth reached]
			),
			'ENSDARG00000095715' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Muscle',
			(int) 3 => 'Heart',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Brain',
			(int) 10 => 'Muscle',
			(int) 11 => 'Brain',
			(int) 12 => 'Muscle'
		)
	),
	'CIL_0007M9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000005583' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000050334' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000097265' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Adipose',
			(int) 25 => 'Adrenal',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Colon',
			(int) 29 => 'Heart',
			(int) 30 => 'Kidney',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis',
			(int) 36 => 'Bladder',
			(int) 37 => 'Brain',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Placenta',
			(int) 45 => 'Bladder',
			(int) 46 => 'Brain',
			(int) 47 => 'Colon',
			(int) 48 => 'Placenta',
			(int) 49 => 'Kidney',
			(int) 50 => 'Muscle',
			(int) 51 => 'Bladder',
			(int) 52 => 'Brain',
			(int) 53 => 'Kidney',
			(int) 54 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007M9_0003',
		'tax_id' => '10090',
		'chromosome' => '13',
		'seq_start' => '82972882',
		'seq_end' => '82974629',
		'region_length' => '1747',
		'region_type' => 'UCNEbase',
		'el_id' => 'MEF2C'
	)
)
$gene_el = array(
	'ENST00000508719' => array(
		'Adrenal' => array(
			'average_FPKM' => '0.032',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.330',
			'stddev_FPKM' => '0.01'
		),
		'Testis' => array(
			'average_FPKM' => '0.056',
			'stddev_FPKM' => '0.03'
		)
	)
)
$gene_key = 'ENSG00000250377'
$is_first = false
$tran_el = array(
	'Adrenal' => array(
		'average_FPKM' => '0.032',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.330',
		'stddev_FPKM' => '0.01'
	),
	'Testis' => array(
		'average_FPKM' => '0.056',
		'stddev_FPKM' => '0.03'
	)
)
$tran_key = 'ENST00000508719'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007M9_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000245864' => null,
		'ENSG00000250705' => null,
		'ENSG00000273878' => 'microRNA 9-2',
		'ENSG00000081189' => 'myocyte enhancer factor 2C',
		'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
		'ENSG00000248309' => 'MEF2C antisense RNA 1',
		'ENSG00000250377' => null,
		'ENSG00000250555' => null,
		'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
		'ENSDARG00000081362' => 'dre-mir-9-5',
		'ENSDARG00000095715' => 'si:ch211-202e12.3',
		'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
		'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
		'ENSMUSG00000065424' => 'microRNA 9-2',
		'ENSMUSG00000097265' => 'predicted gene, 26803'
	),
	'gene_name_arr' => array(
		'ENSG00000245864' => 'CTC-467M3.1',
		'ENSG00000250705' => 'CTC-470C15.1',
		'ENSG00000273878' => 'MIR9-2',
		'ENSG00000081189' => 'MEF2C',
		'ENSG00000245526' => 'LINC00461',
		'ENSG00000248309' => 'MEF2C-AS1',
		'ENSG00000250377' => 'CTC-467M3.3',
		'ENSG00000250555' => 'CTC-467M3.2',
		'ENSDARG00000009418' => 'mef2cb',
		'ENSDARG00000081362' => 'dre-mir-9-5',
		'ENSDARG00000095715' => 'si:ch211-202e12.3',
		'ENSMUSG00000005583' => 'Mef2c',
		'ENSMUSG00000050334' => 'C130071C03Rik',
		'ENSMUSG00000065424' => 'Mir9-2',
		'ENSMUSG00000097265' => 'Gm26803'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 6 => 'Adrenal',
		(int) 13 => 'Bladder',
		(int) 20 => 'Brain',
		(int) 33 => 'Breast',
		(int) 38 => 'Colon',
		(int) 47 => 'Heart',
		(int) 56 => 'Kidney',
		(int) 66 => 'Liver',
		(int) 75 => 'Lung',
		(int) 80 => 'Muscle',
		(int) 92 => 'Ovary',
		(int) 99 => 'Placenta',
		(int) 108 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 79,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000510274' => array(
			'start' => '88676218',
			'end' => '88722831',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'CTC-467M3.1-001'
		),
		'ENST00000509149' => array(
			'start' => '88602780',
			'end' => '88603117',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'CTC-470C15.1-001'
		),
		'ENST00000384838' => array(
			'start' => '88666853',
			'end' => '88666939',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR9-2-201'
		),
		'ENST00000340208' => array(
			'start' => '88718158',
			'end' => '88904082',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-005'
		),
		'ENST00000424173' => array(
			'start' => '88718222',
			'end' => '88904105',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-004'
		),
		'ENST00000437473' => array(
			'start' => '88720349',
			'end' => '88883233',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-003'
		),
		'ENST00000502831' => array(
			'start' => '88761292',
			'end' => '88904105',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-007'
		),
		'ENST00000502983' => array(
			'start' => '88761200',
			'end' => '88884568',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-010'
		),
		'ENST00000503075' => array(
			'start' => '88761325',
			'end' => '88883227',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-013'
		),
		'ENST00000503554' => array(
			'start' => '88731896',
			'end' => '88785542',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2C-019'
		),
		'ENST00000503955' => array(
			'start' => '88887392',
			'end' => '88904052',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-008'
		),
		'ENST00000504921' => array(
			'start' => '88718242',
			'end' => '88823927',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-201'
		),
		'ENST00000506554' => array(
			'start' => '88720844',
			'end' => '88883172',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-025'
		),
		'ENST00000506716' => array(
			'start' => '88731852',
			'end' => '88824340',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-016'
		),
		'ENST00000507984' => array(
			'start' => '88761023',
			'end' => '88827158',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-015'
		),
		'ENST00000508569' => array(
			'start' => '88722574',
			'end' => '88883159',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-022'
		),
		'ENST00000508610' => array(
			'start' => '88761209',
			'end' => '88877977',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-014'
		),
		'ENST00000509349' => array(
			'start' => '88823861',
			'end' => '88883224',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2C-011'
		),
		'ENST00000509373' => array(
			'start' => '88804770',
			'end' => '88824275',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-017'
		),
		'ENST00000510942' => array(
			'start' => '88720825',
			'end' => '88883172',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-024'
		),
		'ENST00000510980' => array(
			'start' => '88722837',
			'end' => '88729519',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-021'
		),
		'ENST00000511086' => array(
			'start' => '88804526',
			'end' => '88883174',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-018'
		),
		'ENST00000513252' => array(
			'start' => '88731807',
			'end' => '88883147',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-012'
		),
		'ENST00000514015' => array(
			'start' => '88722595',
			'end' => '88883224',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-023'
		),
		'ENST00000514028' => array(
			'start' => '88720349',
			'end' => '88883214',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'MEF2C-001'
		),
		'ENST00000515093' => array(
			'start' => '88823796',
			'end' => '88889324',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'MEF2C-006'
		),
		'ENST00000515715' => array(
			'start' => '88731444',
			'end' => '88749124',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'MEF2C-020'
		),
		'ENST00000500197' => array(
			'start' => '88664445',
			'end' => '88673339',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-003'
		),
		'ENST00000502301' => array(
			'start' => '88540728',
			'end' => '88678445',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-010'
		),
		'ENST00000504246' => array(
			'start' => '88666320',
			'end' => '88676298',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-002'
		),
		'ENST00000505030' => array(
			'start' => '88664445',
			'end' => '88673325',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-005'
		),
		'ENST00000506014' => array(
			'start' => '88540727',
			'end' => '88678445',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-009'
		),
		'ENST00000506664' => array(
			'start' => '88540511',
			'end' => '88611776',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-012'
		),
		'ENST00000506978' => array(
			'start' => '88507546',
			'end' => '88684808',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-013'
		),
		'ENST00000508885' => array(
			'start' => '88540831',
			'end' => '88659835',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-011'
		),
		'ENST00000509265' => array(
			'start' => '88667353',
			'end' => '88684823',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-016'
		),
		'ENST00000509405' => array(
			'start' => '88540847',
			'end' => '88684805',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-014'
		),
		'ENST00000509783' => array(
			'start' => '88666879',
			'end' => '88684770',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-015'
		),
		'ENST00000511014' => array(
			'start' => '88664446',
			'end' => '88684936',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-001'
		),
		'ENST00000513026' => array(
			'start' => '88667274',
			'end' => '88678448',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-008'
		),
		'ENST00000513805' => array(
			'start' => '88540884',
			'end' => '88684825',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-007'
		),
		'ENST00000513893' => array(
			'start' => '88667342',
			'end' => '88691041',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-006'
		),
		'ENST00000515885' => array(
			'start' => '88666954',
			'end' => '88672696',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00461-004'
		),
		'ENST00000506665' => array(
			'start' => '88892257',
			'end' => '88965896',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-011'
		),
		'ENST00000508521' => array(
			'start' => '88943087',
			'end' => '89075331',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-013'
		),
		'ENST00000508718' => array(
			'start' => '88889454',
			'end' => '88943298',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-009'
		),
		'ENST00000508742' => array(
			'start' => '89418807',
			'end' => '89466398',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-014'
		),
		'ENST00000509179' => array(
			'start' => '88889374',
			'end' => '88965872',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-002'
		),
		'ENST00000511100' => array(
			'start' => '88883328',
			'end' => '89032293',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-004'
		),
		'ENST00000511876' => array(
			'start' => '88889451',
			'end' => '88905270',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-008'
		),
		'ENST00000512585' => array(
			'start' => '88883417',
			'end' => '89305171',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-006'
		),
		'ENST00000513704' => array(
			'start' => '88889308',
			'end' => '88943343',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-007'
		),
		'ENST00000514011' => array(
			'start' => '88889335',
			'end' => '88967279',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-001'
		),
		'ENST00000514092' => array(
			'start' => '88889445',
			'end' => '89465982',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-003'
		),
		'ENST00000514158' => array(
			'start' => '88889460',
			'end' => '88941370',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-010'
		),
		'ENST00000514571' => array(
			'start' => '88965875',
			'end' => '89168668',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-012'
		),
		'ENST00000514794' => array(
			'start' => '88883399',
			'end' => '88943214',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'MEF2C-AS1-005'
		),
		'ENST00000508719' => array(
			'start' => '88692645',
			'end' => '88693972',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'CTC-467M3.3-001'
		),
		'ENST00000511000' => array(
			'start' => '88692651',
			'end' => '88692859',
			'transcript_biotype' => 'antisense',
			'transcript_name' => 'CTC-467M3.2-001'
		),
		'ENSDART00000044083' => array(
			'start' => '49966161',
			'end' => '50042936',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mef2cb-201'
		),
		'ENSDART00000135911' => array(
			'start' => '49966176',
			'end' => '50043000',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'mef2cb-001'
		),
		'ENSDART00000138702' => array(
			'start' => '50037192',
			'end' => '50042987',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'mef2cb-002'
		),
		'ENSDART00000117420' => array(
			'start' => '49952889',
			'end' => '49952975',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'dre-mir-9-5.1-201'
		),
		'ENSDART00000140395' => array(
			'start' => '49892948',
			'end' => '49958412',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-001'
		),
		'ENSDART00000141802' => array(
			'start' => '49893067',
			'end' => '49958068',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-003'
		),
		'ENSDART00000144252' => array(
			'start' => '49892946',
			'end' => '49955486',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-002'
		),
		'ENSDART00000153239' => array(
			'start' => '49892948',
			'end' => '49958038',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'si:ch211-202e12.3-004'
		),
		'ENSMUST00000005722' => array(
			'start' => '83504034',
			'end' => '83667079',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2c-201'
		),
		'ENSMUST00000163888' => array(
			'start' => '83504034',
			'end' => '83667079',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2c-202'
		),
		'ENSMUST00000185052' => array(
			'start' => '83573607',
			'end' => '83664472',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Mef2c-001'
		),
		'ENSMUST00000052354' => array(
			'start' => '83738881',
			'end' => '83741307',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-201'
		),
		'ENSMUST00000131907' => array(
			'start' => '83721381',
			'end' => '83741308',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-001'
		),
		'ENSMUST00000182701' => array(
			'start' => '83732566',
			'end' => '83735521',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-003'
		),
		'ENSMUST00000182788' => array(
			'start' => '83728106',
			'end' => '83735669',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-002'
		),
		'ENSMUST00000185281' => array(
			'start' => '83721381',
			'end' => '83872680',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-005'
		),
		'ENSMUST00000187663' => array(
			'start' => '83738863',
			'end' => '83884194',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'C130071C03Rik-006'
		),
		'ENSMUST00000083490' => array(
			'start' => '83738806',
			'end' => '83738892',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir9-2-201'
		),
		'ENSMUST00000181705' => array(
			'start' => '83723442',
			'end' => '83729582',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Gm26803-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007M9_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007M9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007M9_0001' => array(
		'genes_in_region' => array(
			'ENSG00000250705' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart'
		)
	),
	'CIL_0007M9_0002' => array(
		'genes_in_region' => array(
			'ENSG00000250377' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Testis',
			(int) 2 => 'Bladder',
			(int) 3 => 'Adipose',
			(int) 4 => 'Adrenal',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Heart',
			(int) 8 => 'Kidney',
			(int) 9 => 'Liver',
			(int) 10 => 'Lung',
			(int) 11 => 'Muscle',
			(int) 12 => 'Ovary',
			(int) 13 => 'Placenta',
			(int) 14 => 'Testis',
			(int) 15 => 'Placenta',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adipose',
			(int) 24 => 'Adrenal',
			(int) 25 => 'Bladder',
			(int) 26 => 'Breast',
			(int) 27 => 'Colon',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Colon',
			(int) 36 => 'Colon',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Adrenal',
			(int) 41 => 'Brain',
			(int) 42 => 'Testis'
		)
	),
	'CIL_0007M9_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000009418' => array(
				[maximum depth reached]
			),
			'ENSDARG00000095715' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Muscle',
			(int) 3 => 'Heart',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Brain',
			(int) 10 => 'Muscle',
			(int) 11 => 'Brain',
			(int) 12 => 'Muscle'
		)
	),
	'CIL_0007M9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000005583' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000050334' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000097265' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Adipose',
			(int) 25 => 'Adrenal',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Colon',
			(int) 29 => 'Heart',
			(int) 30 => 'Kidney',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis',
			(int) 36 => 'Bladder',
			(int) 37 => 'Brain',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Placenta',
			(int) 45 => 'Bladder',
			(int) 46 => 'Brain',
			(int) 47 => 'Colon',
			(int) 48 => 'Placenta',
			(int) 49 => 'Kidney',
			(int) 50 => 'Muscle',
			(int) 51 => 'Bladder',
			(int) 52 => 'Brain',
			(int) 53 => 'Kidney',
			(int) 54 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000245864' => null,
	'ENSG00000250705' => null,
	'ENSG00000273878' => 'microRNA 9-2',
	'ENSG00000081189' => 'myocyte enhancer factor 2C',
	'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
	'ENSG00000248309' => 'MEF2C antisense RNA 1',
	'ENSG00000250377' => null,
	'ENSG00000250555' => null,
	'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
	'ENSDARG00000081362' => 'dre-mir-9-5',
	'ENSDARG00000095715' => 'si:ch211-202e12.3',
	'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
	'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
	'ENSMUSG00000065424' => 'microRNA 9-2',
	'ENSMUSG00000097265' => 'predicted gene, 26803'
)
$gene_name_arr = array(
	'ENSG00000245864' => 'CTC-467M3.1',
	'ENSG00000250705' => 'CTC-470C15.1',
	'ENSG00000273878' => 'MIR9-2',
	'ENSG00000081189' => 'MEF2C',
	'ENSG00000245526' => 'LINC00461',
	'ENSG00000248309' => 'MEF2C-AS1',
	'ENSG00000250377' => 'CTC-467M3.3',
	'ENSG00000250555' => 'CTC-467M3.2',
	'ENSDARG00000009418' => 'mef2cb',
	'ENSDARG00000081362' => 'dre-mir-9-5',
	'ENSDARG00000095715' => 'si:ch211-202e12.3',
	'ENSMUSG00000005583' => 'Mef2c',
	'ENSMUSG00000050334' => 'C130071C03Rik',
	'ENSMUSG00000065424' => 'Mir9-2',
	'ENSMUSG00000097265' => 'Gm26803'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0001',
			'tax_id' => '9606',
			'chromosome' => '5',
			'seq_start' => '88540043',
			'seq_end' => '88678047',
			'region_length' => '138004',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0002',
			'tax_id' => '9606',
			'chromosome' => '5',
			'seq_start' => '88678048',
			'seq_end' => '89377026',
			'region_length' => '698978',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0003',
			'tax_id' => '10090',
			'chromosome' => '13',
			'seq_start' => '82972882',
			'seq_end' => '82974629',
			'region_length' => '1747',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0004',
			'tax_id' => '7955',
			'chromosome' => '5',
			'seq_start' => '49916006',
			'seq_end' => '50254911',
			'region_length' => '338905',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007M9_0005',
			'tax_id' => '10090',
			'chromosome' => '13',
			'seq_start' => '83484793',
			'seq_end' => '83885112',
			'region_length' => '400319',
			'region_type' => 'UCNEbase',
			'el_id' => 'MEF2C'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 6 => 'Adrenal',
	(int) 13 => 'Bladder',
	(int) 20 => 'Brain',
	(int) 33 => 'Breast',
	(int) 38 => 'Colon',
	(int) 47 => 'Heart',
	(int) 56 => 'Kidney',
	(int) 66 => 'Liver',
	(int) 75 => 'Lung',
	(int) 80 => 'Muscle',
	(int) 92 => 'Ovary',
	(int) 99 => 'Placenta',
	(int) 108 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 79
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000510274' => array(
		'start' => '88676218',
		'end' => '88722831',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'CTC-467M3.1-001'
	),
	'ENST00000509149' => array(
		'start' => '88602780',
		'end' => '88603117',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'CTC-470C15.1-001'
	),
	'ENST00000384838' => array(
		'start' => '88666853',
		'end' => '88666939',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR9-2-201'
	),
	'ENST00000340208' => array(
		'start' => '88718158',
		'end' => '88904082',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-005'
	),
	'ENST00000424173' => array(
		'start' => '88718222',
		'end' => '88904105',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-004'
	),
	'ENST00000437473' => array(
		'start' => '88720349',
		'end' => '88883233',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-003'
	),
	'ENST00000502831' => array(
		'start' => '88761292',
		'end' => '88904105',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-007'
	),
	'ENST00000502983' => array(
		'start' => '88761200',
		'end' => '88884568',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-010'
	),
	'ENST00000503075' => array(
		'start' => '88761325',
		'end' => '88883227',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-013'
	),
	'ENST00000503554' => array(
		'start' => '88731896',
		'end' => '88785542',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2C-019'
	),
	'ENST00000503955' => array(
		'start' => '88887392',
		'end' => '88904052',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-008'
	),
	'ENST00000504921' => array(
		'start' => '88718242',
		'end' => '88823927',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-201'
	),
	'ENST00000506554' => array(
		'start' => '88720844',
		'end' => '88883172',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-025'
	),
	'ENST00000506716' => array(
		'start' => '88731852',
		'end' => '88824340',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-016'
	),
	'ENST00000507984' => array(
		'start' => '88761023',
		'end' => '88827158',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-015'
	),
	'ENST00000508569' => array(
		'start' => '88722574',
		'end' => '88883159',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-022'
	),
	'ENST00000508610' => array(
		'start' => '88761209',
		'end' => '88877977',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-014'
	),
	'ENST00000509349' => array(
		'start' => '88823861',
		'end' => '88883224',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2C-011'
	),
	'ENST00000509373' => array(
		'start' => '88804770',
		'end' => '88824275',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-017'
	),
	'ENST00000510942' => array(
		'start' => '88720825',
		'end' => '88883172',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-024'
	),
	'ENST00000510980' => array(
		'start' => '88722837',
		'end' => '88729519',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-021'
	),
	'ENST00000511086' => array(
		'start' => '88804526',
		'end' => '88883174',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-018'
	),
	'ENST00000513252' => array(
		'start' => '88731807',
		'end' => '88883147',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-012'
	),
	'ENST00000514015' => array(
		'start' => '88722595',
		'end' => '88883224',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-023'
	),
	'ENST00000514028' => array(
		'start' => '88720349',
		'end' => '88883214',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'MEF2C-001'
	),
	'ENST00000515093' => array(
		'start' => '88823796',
		'end' => '88889324',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'MEF2C-006'
	),
	'ENST00000515715' => array(
		'start' => '88731444',
		'end' => '88749124',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'MEF2C-020'
	),
	'ENST00000500197' => array(
		'start' => '88664445',
		'end' => '88673339',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-003'
	),
	'ENST00000502301' => array(
		'start' => '88540728',
		'end' => '88678445',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-010'
	),
	'ENST00000504246' => array(
		'start' => '88666320',
		'end' => '88676298',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-002'
	),
	'ENST00000505030' => array(
		'start' => '88664445',
		'end' => '88673325',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-005'
	),
	'ENST00000506014' => array(
		'start' => '88540727',
		'end' => '88678445',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-009'
	),
	'ENST00000506664' => array(
		'start' => '88540511',
		'end' => '88611776',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-012'
	),
	'ENST00000506978' => array(
		'start' => '88507546',
		'end' => '88684808',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-013'
	),
	'ENST00000508885' => array(
		'start' => '88540831',
		'end' => '88659835',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-011'
	),
	'ENST00000509265' => array(
		'start' => '88667353',
		'end' => '88684823',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-016'
	),
	'ENST00000509405' => array(
		'start' => '88540847',
		'end' => '88684805',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-014'
	),
	'ENST00000509783' => array(
		'start' => '88666879',
		'end' => '88684770',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-015'
	),
	'ENST00000511014' => array(
		'start' => '88664446',
		'end' => '88684936',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-001'
	),
	'ENST00000513026' => array(
		'start' => '88667274',
		'end' => '88678448',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-008'
	),
	'ENST00000513805' => array(
		'start' => '88540884',
		'end' => '88684825',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-007'
	),
	'ENST00000513893' => array(
		'start' => '88667342',
		'end' => '88691041',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-006'
	),
	'ENST00000515885' => array(
		'start' => '88666954',
		'end' => '88672696',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00461-004'
	),
	'ENST00000506665' => array(
		'start' => '88892257',
		'end' => '88965896',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-011'
	),
	'ENST00000508521' => array(
		'start' => '88943087',
		'end' => '89075331',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-013'
	),
	'ENST00000508718' => array(
		'start' => '88889454',
		'end' => '88943298',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-009'
	),
	'ENST00000508742' => array(
		'start' => '89418807',
		'end' => '89466398',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-014'
	),
	'ENST00000509179' => array(
		'start' => '88889374',
		'end' => '88965872',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-002'
	),
	'ENST00000511100' => array(
		'start' => '88883328',
		'end' => '89032293',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-004'
	),
	'ENST00000511876' => array(
		'start' => '88889451',
		'end' => '88905270',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-008'
	),
	'ENST00000512585' => array(
		'start' => '88883417',
		'end' => '89305171',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-006'
	),
	'ENST00000513704' => array(
		'start' => '88889308',
		'end' => '88943343',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-007'
	),
	'ENST00000514011' => array(
		'start' => '88889335',
		'end' => '88967279',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-001'
	),
	'ENST00000514092' => array(
		'start' => '88889445',
		'end' => '89465982',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-003'
	),
	'ENST00000514158' => array(
		'start' => '88889460',
		'end' => '88941370',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-010'
	),
	'ENST00000514571' => array(
		'start' => '88965875',
		'end' => '89168668',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-012'
	),
	'ENST00000514794' => array(
		'start' => '88883399',
		'end' => '88943214',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'MEF2C-AS1-005'
	),
	'ENST00000508719' => array(
		'start' => '88692645',
		'end' => '88693972',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'CTC-467M3.3-001'
	),
	'ENST00000511000' => array(
		'start' => '88692651',
		'end' => '88692859',
		'transcript_biotype' => 'antisense',
		'transcript_name' => 'CTC-467M3.2-001'
	),
	'ENSDART00000044083' => array(
		'start' => '49966161',
		'end' => '50042936',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mef2cb-201'
	),
	'ENSDART00000135911' => array(
		'start' => '49966176',
		'end' => '50043000',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'mef2cb-001'
	),
	'ENSDART00000138702' => array(
		'start' => '50037192',
		'end' => '50042987',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'mef2cb-002'
	),
	'ENSDART00000117420' => array(
		'start' => '49952889',
		'end' => '49952975',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'dre-mir-9-5.1-201'
	),
	'ENSDART00000140395' => array(
		'start' => '49892948',
		'end' => '49958412',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-001'
	),
	'ENSDART00000141802' => array(
		'start' => '49893067',
		'end' => '49958068',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-003'
	),
	'ENSDART00000144252' => array(
		'start' => '49892946',
		'end' => '49955486',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-002'
	),
	'ENSDART00000153239' => array(
		'start' => '49892948',
		'end' => '49958038',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'si:ch211-202e12.3-004'
	),
	'ENSMUST00000005722' => array(
		'start' => '83504034',
		'end' => '83667079',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2c-201'
	),
	'ENSMUST00000163888' => array(
		'start' => '83504034',
		'end' => '83667079',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2c-202'
	),
	'ENSMUST00000185052' => array(
		'start' => '83573607',
		'end' => '83664472',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Mef2c-001'
	),
	'ENSMUST00000052354' => array(
		'start' => '83738881',
		'end' => '83741307',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-201'
	),
	'ENSMUST00000131907' => array(
		'start' => '83721381',
		'end' => '83741308',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-001'
	),
	'ENSMUST00000182701' => array(
		'start' => '83732566',
		'end' => '83735521',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-003'
	),
	'ENSMUST00000182788' => array(
		'start' => '83728106',
		'end' => '83735669',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-002'
	),
	'ENSMUST00000185281' => array(
		'start' => '83721381',
		'end' => '83872680',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-005'
	),
	'ENSMUST00000187663' => array(
		'start' => '83738863',
		'end' => '83884194',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'C130071C03Rik-006'
	),
	'ENSMUST00000083490' => array(
		'start' => '83738806',
		'end' => '83738892',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir9-2-201'
	),
	'ENSMUST00000181705' => array(
		'start' => '83723442',
		'end' => '83729582',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Gm26803-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007M9_0001' => array(
		'genes_in_region' => array(
			'ENSG00000250705' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart'
		)
	),
	'CIL_0007M9_0002' => array(
		'genes_in_region' => array(
			'ENSG00000250377' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Muscle',
			(int) 1 => 'Testis',
			(int) 2 => 'Bladder',
			(int) 3 => 'Adipose',
			(int) 4 => 'Adrenal',
			(int) 5 => 'Brain',
			(int) 6 => 'Colon',
			(int) 7 => 'Heart',
			(int) 8 => 'Kidney',
			(int) 9 => 'Liver',
			(int) 10 => 'Lung',
			(int) 11 => 'Muscle',
			(int) 12 => 'Ovary',
			(int) 13 => 'Placenta',
			(int) 14 => 'Testis',
			(int) 15 => 'Placenta',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adipose',
			(int) 24 => 'Adrenal',
			(int) 25 => 'Bladder',
			(int) 26 => 'Breast',
			(int) 27 => 'Colon',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Muscle',
			(int) 32 => 'Ovary',
			(int) 33 => 'Placenta',
			(int) 34 => 'Testis',
			(int) 35 => 'Colon',
			(int) 36 => 'Colon',
			(int) 37 => 'Ovary',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Adrenal',
			(int) 41 => 'Brain',
			(int) 42 => 'Testis'
		)
	),
	'CIL_0007M9_0004' => array(
		'genes_in_region' => array(
			'ENSDARG00000009418' => array(
				[maximum depth reached]
			),
			'ENSDARG00000095715' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Muscle',
			(int) 3 => 'Heart',
			(int) 4 => 'Brain',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Brain',
			(int) 10 => 'Muscle',
			(int) 11 => 'Brain',
			(int) 12 => 'Muscle'
		)
	),
	'CIL_0007M9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000005583' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000050334' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000097265' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Muscle',
			(int) 9 => 'Testis',
			(int) 10 => 'Adipose',
			(int) 11 => 'Adrenal',
			(int) 12 => 'Bladder',
			(int) 13 => 'Brain',
			(int) 14 => 'Breast',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Kidney',
			(int) 18 => 'Liver',
			(int) 19 => 'Lung',
			(int) 20 => 'Muscle',
			(int) 21 => 'Ovary',
			(int) 22 => 'Placenta',
			(int) 23 => 'Testis',
			(int) 24 => 'Adipose',
			(int) 25 => 'Adrenal',
			(int) 26 => 'Brain',
			(int) 27 => 'Breast',
			(int) 28 => 'Colon',
			(int) 29 => 'Heart',
			(int) 30 => 'Kidney',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis',
			(int) 36 => 'Bladder',
			(int) 37 => 'Brain',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Liver',
			(int) 42 => 'Muscle',
			(int) 43 => 'Ovary',
			(int) 44 => 'Placenta',
			(int) 45 => 'Bladder',
			(int) 46 => 'Brain',
			(int) 47 => 'Colon',
			(int) 48 => 'Placenta',
			(int) 49 => 'Kidney',
			(int) 50 => 'Muscle',
			(int) 51 => 'Bladder',
			(int) 52 => 'Brain',
			(int) 53 => 'Kidney',
			(int) 54 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007M9_0003',
		'tax_id' => '10090',
		'chromosome' => '13',
		'seq_start' => '82972882',
		'seq_end' => '82974629',
		'region_length' => '1747',
		'region_type' => 'UCNEbase',
		'el_id' => 'MEF2C'
	)
)
$gene_el = array(
	'ENST00000508719' => array(
		'Adrenal' => array(
			'average_FPKM' => '0.032',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.330',
			'stddev_FPKM' => '0.01'
		),
		'Testis' => array(
			'average_FPKM' => '0.056',
			'stddev_FPKM' => '0.03'
		)
	)
)
$gene_key = 'ENSG00000250377'
$is_first = false
$tran_el = array(
	'Adrenal' => array(
		'average_FPKM' => '0.032',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.330',
		'stddev_FPKM' => '0.01'
	),
	'Testis' => array(
		'average_FPKM' => '0.056',
		'stddev_FPKM' => '0.03'
	)
)
$tran_key = 'ENST00000508719'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
MEF2C		UCNEbase	10090	13:82972882-82974629
Gene		Transcript	Position	Biotype

CIL_0007M9_0004 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
MEF2C	UCNEbase	7955	5:49916006-50254911
Gene	Transcript	Position	Biotype
ENSDARG00000009418 (mef2cb) myocyte enhancer factor 2cb	ENSDART00000044083 (mef2cb-201)	49966161-50042936	protein_coding
	ENSDART00000135911 (mef2cb-001)	49966176-50043000	protein_coding
	ENSDART00000138702 (mef2cb-002)	50037192-50042987	processed_transcript
ENSDARG00000095715 (si:ch211-202e12.3) si:ch211-202e12.3	ENSDART00000140395 (si:ch211-202e12.3-001)	49892948-49958412	lincRNA
	ENSDART00000141802 (si:ch211-202e12.3-003)	49893067-49958068	lincRNA
	ENSDART00000144252 (si:ch211-202e12.3-002)	49892946-49955486	lincRNA
	ENSDART00000153239 (si:ch211-202e12.3-004)	49892948-49958038	lincRNA

CIL_0007M9_0005 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
MEF2C	UCNEbase	10090	13:83484793-83885112
Gene	Transcript	Position	Biotype
ENSMUSG00000005583 (Mef2c) myocyte enhancer factor 2C	ENSMUST00000005722 (Mef2c-201)	83504034-83667079	protein_coding
	ENSMUST00000163888 (Mef2c-202)	83504034-83667079	protein_coding
	ENSMUST00000185052 (Mef2c-001)	83573607-83664472	protein_coding
ENSMUSG00000050334 (C130071C03Rik) RIKEN cDNA C130071C03 gene	ENSMUST00000052354 (C130071C03Rik-201)	83738881-83741307	lincRNA
	ENSMUST00000131907 (C130071C03Rik-001)	83721381-83741308	lincRNA
	ENSMUST00000182701 (C130071C03Rik-003)	83732566-83735521	lincRNA
	ENSMUST00000182788 (C130071C03Rik-002)	83728106-83735669	lincRNA
	ENSMUST00000185281 (C130071C03Rik-005)	83721381-83872680	lincRNA
	ENSMUST00000187663 (C130071C03Rik-006)	83738863-83884194	lincRNA
ENSMUSG00000097265 (Gm26803) predicted gene, 26803	ENSMUST00000181705 (Gm26803-001)	83723442-83729582	lincRNA

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Homo sapiens Ensembl (GRCh38)

Homo sapiens Ensembl (GRCh38)

Mus musculus Ensembl (GRCm38)

Danio rerio Ensembl (Zv9)

Mus musculus Ensembl (GRCm38)

Expression Patterns

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