| Source ID |
Type |
Tax ID |
Position |
| MEF2C |
UCNEbase |
10090 |
13:82972882-82974629  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007M9_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000245864' => null,
'ENSG00000250705' => null,
'ENSG00000273878' => 'microRNA 9-2',
'ENSG00000081189' => 'myocyte enhancer factor 2C',
'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
'ENSG00000248309' => 'MEF2C antisense RNA 1',
'ENSG00000250377' => null,
'ENSG00000250555' => null,
'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
'ENSMUSG00000065424' => 'microRNA 9-2',
'ENSMUSG00000097265' => 'predicted gene, 26803'
),
'gene_name_arr' => array(
'ENSG00000245864' => 'CTC-467M3.1',
'ENSG00000250705' => 'CTC-470C15.1',
'ENSG00000273878' => 'MIR9-2',
'ENSG00000081189' => 'MEF2C',
'ENSG00000245526' => 'LINC00461',
'ENSG00000248309' => 'MEF2C-AS1',
'ENSG00000250377' => 'CTC-467M3.3',
'ENSG00000250555' => 'CTC-467M3.2',
'ENSDARG00000009418' => 'mef2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'Mef2c',
'ENSMUSG00000050334' => 'C130071C03Rik',
'ENSMUSG00000065424' => 'Mir9-2',
'ENSMUSG00000097265' => 'Gm26803'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 20 => 'Brain',
(int) 33 => 'Breast',
(int) 38 => 'Colon',
(int) 47 => 'Heart',
(int) 56 => 'Kidney',
(int) 66 => 'Liver',
(int) 75 => 'Lung',
(int) 80 => 'Muscle',
(int) 92 => 'Ovary',
(int) 99 => 'Placenta',
(int) 108 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 79,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000510274' => array(
'start' => '88676218',
'end' => '88722831',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.1-001'
),
'ENST00000509149' => array(
'start' => '88602780',
'end' => '88603117',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-470C15.1-001'
),
'ENST00000384838' => array(
'start' => '88666853',
'end' => '88666939',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR9-2-201'
),
'ENST00000340208' => array(
'start' => '88718158',
'end' => '88904082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-005'
),
'ENST00000424173' => array(
'start' => '88718222',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-004'
),
'ENST00000437473' => array(
'start' => '88720349',
'end' => '88883233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-003'
),
'ENST00000502831' => array(
'start' => '88761292',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-007'
),
'ENST00000502983' => array(
'start' => '88761200',
'end' => '88884568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-010'
),
'ENST00000503075' => array(
'start' => '88761325',
'end' => '88883227',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-013'
),
'ENST00000503554' => array(
'start' => '88731896',
'end' => '88785542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-019'
),
'ENST00000503955' => array(
'start' => '88887392',
'end' => '88904052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-008'
),
'ENST00000504921' => array(
'start' => '88718242',
'end' => '88823927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-201'
),
'ENST00000506554' => array(
'start' => '88720844',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-025'
),
'ENST00000506716' => array(
'start' => '88731852',
'end' => '88824340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-016'
),
'ENST00000507984' => array(
'start' => '88761023',
'end' => '88827158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-015'
),
'ENST00000508569' => array(
'start' => '88722574',
'end' => '88883159',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-022'
),
'ENST00000508610' => array(
'start' => '88761209',
'end' => '88877977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-014'
),
'ENST00000509349' => array(
'start' => '88823861',
'end' => '88883224',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-011'
),
'ENST00000509373' => array(
'start' => '88804770',
'end' => '88824275',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-017'
),
'ENST00000510942' => array(
'start' => '88720825',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-024'
),
'ENST00000510980' => array(
'start' => '88722837',
'end' => '88729519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-021'
),
'ENST00000511086' => array(
'start' => '88804526',
'end' => '88883174',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-018'
),
'ENST00000513252' => array(
'start' => '88731807',
'end' => '88883147',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-012'
),
'ENST00000514015' => array(
'start' => '88722595',
'end' => '88883224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-023'
),
'ENST00000514028' => array(
'start' => '88720349',
'end' => '88883214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-001'
),
'ENST00000515093' => array(
'start' => '88823796',
'end' => '88889324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-006'
),
'ENST00000515715' => array(
'start' => '88731444',
'end' => '88749124',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-020'
),
'ENST00000500197' => array(
'start' => '88664445',
'end' => '88673339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-003'
),
'ENST00000502301' => array(
'start' => '88540728',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-010'
),
'ENST00000504246' => array(
'start' => '88666320',
'end' => '88676298',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-002'
),
'ENST00000505030' => array(
'start' => '88664445',
'end' => '88673325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-005'
),
'ENST00000506014' => array(
'start' => '88540727',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-009'
),
'ENST00000506664' => array(
'start' => '88540511',
'end' => '88611776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-012'
),
'ENST00000506978' => array(
'start' => '88507546',
'end' => '88684808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-013'
),
'ENST00000508885' => array(
'start' => '88540831',
'end' => '88659835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-011'
),
'ENST00000509265' => array(
'start' => '88667353',
'end' => '88684823',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-016'
),
'ENST00000509405' => array(
'start' => '88540847',
'end' => '88684805',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-014'
),
'ENST00000509783' => array(
'start' => '88666879',
'end' => '88684770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-015'
),
'ENST00000511014' => array(
'start' => '88664446',
'end' => '88684936',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-001'
),
'ENST00000513026' => array(
'start' => '88667274',
'end' => '88678448',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-008'
),
'ENST00000513805' => array(
'start' => '88540884',
'end' => '88684825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-007'
),
'ENST00000513893' => array(
'start' => '88667342',
'end' => '88691041',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-006'
),
'ENST00000515885' => array(
'start' => '88666954',
'end' => '88672696',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-004'
),
'ENST00000506665' => array(
'start' => '88892257',
'end' => '88965896',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-011'
),
'ENST00000508521' => array(
'start' => '88943087',
'end' => '89075331',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-013'
),
'ENST00000508718' => array(
'start' => '88889454',
'end' => '88943298',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-009'
),
'ENST00000508742' => array(
'start' => '89418807',
'end' => '89466398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-014'
),
'ENST00000509179' => array(
'start' => '88889374',
'end' => '88965872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-002'
),
'ENST00000511100' => array(
'start' => '88883328',
'end' => '89032293',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-004'
),
'ENST00000511876' => array(
'start' => '88889451',
'end' => '88905270',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-008'
),
'ENST00000512585' => array(
'start' => '88883417',
'end' => '89305171',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-006'
),
'ENST00000513704' => array(
'start' => '88889308',
'end' => '88943343',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-007'
),
'ENST00000514011' => array(
'start' => '88889335',
'end' => '88967279',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-001'
),
'ENST00000514092' => array(
'start' => '88889445',
'end' => '89465982',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-003'
),
'ENST00000514158' => array(
'start' => '88889460',
'end' => '88941370',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-010'
),
'ENST00000514571' => array(
'start' => '88965875',
'end' => '89168668',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-012'
),
'ENST00000514794' => array(
'start' => '88883399',
'end' => '88943214',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-005'
),
'ENST00000508719' => array(
'start' => '88692645',
'end' => '88693972',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-467M3.3-001'
),
'ENST00000511000' => array(
'start' => '88692651',
'end' => '88692859',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.2-001'
),
'ENSDART00000044083' => array(
'start' => '49966161',
'end' => '50042936',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-201'
),
'ENSDART00000135911' => array(
'start' => '49966176',
'end' => '50043000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-001'
),
'ENSDART00000138702' => array(
'start' => '50037192',
'end' => '50042987',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'mef2cb-002'
),
'ENSDART00000117420' => array(
'start' => '49952889',
'end' => '49952975',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-9-5.1-201'
),
'ENSDART00000140395' => array(
'start' => '49892948',
'end' => '49958412',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-001'
),
'ENSDART00000141802' => array(
'start' => '49893067',
'end' => '49958068',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-003'
),
'ENSDART00000144252' => array(
'start' => '49892946',
'end' => '49955486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-002'
),
'ENSDART00000153239' => array(
'start' => '49892948',
'end' => '49958038',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-004'
),
'ENSMUST00000005722' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-201'
),
'ENSMUST00000163888' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-202'
),
'ENSMUST00000185052' => array(
'start' => '83573607',
'end' => '83664472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-001'
),
'ENSMUST00000052354' => array(
'start' => '83738881',
'end' => '83741307',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-201'
),
'ENSMUST00000131907' => array(
'start' => '83721381',
'end' => '83741308',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-001'
),
'ENSMUST00000182701' => array(
'start' => '83732566',
'end' => '83735521',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-003'
),
'ENSMUST00000182788' => array(
'start' => '83728106',
'end' => '83735669',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-002'
),
'ENSMUST00000185281' => array(
'start' => '83721381',
'end' => '83872680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-005'
),
'ENSMUST00000187663' => array(
'start' => '83738863',
'end' => '83884194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-006'
),
'ENSMUST00000083490' => array(
'start' => '83738806',
'end' => '83738892',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir9-2-201'
),
'ENSMUST00000181705' => array(
'start' => '83723442',
'end' => '83729582',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26803-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
'ENSG00000250705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart'
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
'ENSG00000250377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle',
(int) 1 => 'Testis',
(int) 2 => 'Bladder',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Brain',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Placenta',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Colon',
(int) 36 => 'Colon',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Brain',
(int) 42 => 'Testis'
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
'ENSDARG00000009418' => array(
[maximum depth reached]
),
'ENSDARG00000095715' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Muscle',
(int) 11 => 'Brain',
(int) 12 => 'Muscle'
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005583' => array(
[maximum depth reached]
),
'ENSMUSG00000050334' => array(
[maximum depth reached]
),
'ENSMUSG00000097265' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Placenta',
(int) 49 => 'Kidney',
(int) 50 => 'Muscle',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000245864' => null,
'ENSG00000250705' => null,
'ENSG00000273878' => 'microRNA 9-2',
'ENSG00000081189' => 'myocyte enhancer factor 2C',
'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
'ENSG00000248309' => 'MEF2C antisense RNA 1',
'ENSG00000250377' => null,
'ENSG00000250555' => null,
'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
'ENSMUSG00000065424' => 'microRNA 9-2',
'ENSMUSG00000097265' => 'predicted gene, 26803'
)
$gene_name_arr = array(
'ENSG00000245864' => 'CTC-467M3.1',
'ENSG00000250705' => 'CTC-470C15.1',
'ENSG00000273878' => 'MIR9-2',
'ENSG00000081189' => 'MEF2C',
'ENSG00000245526' => 'LINC00461',
'ENSG00000248309' => 'MEF2C-AS1',
'ENSG00000250377' => 'CTC-467M3.3',
'ENSG00000250555' => 'CTC-467M3.2',
'ENSDARG00000009418' => 'mef2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'Mef2c',
'ENSMUSG00000050334' => 'C130071C03Rik',
'ENSMUSG00000065424' => 'Mir9-2',
'ENSMUSG00000097265' => 'Gm26803'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '88540043',
'seq_end' => '88678047',
'region_length' => '138004',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0002',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '88678048',
'seq_end' => '89377026',
'region_length' => '698978',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0003',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '82972882',
'seq_end' => '82974629',
'region_length' => '1747',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0004',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '49916006',
'seq_end' => '50254911',
'region_length' => '338905',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0005',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '83484793',
'seq_end' => '83885112',
'region_length' => '400319',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 20 => 'Brain',
(int) 33 => 'Breast',
(int) 38 => 'Colon',
(int) 47 => 'Heart',
(int) 56 => 'Kidney',
(int) 66 => 'Liver',
(int) 75 => 'Lung',
(int) 80 => 'Muscle',
(int) 92 => 'Ovary',
(int) 99 => 'Placenta',
(int) 108 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 79
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000510274' => array(
'start' => '88676218',
'end' => '88722831',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.1-001'
),
'ENST00000509149' => array(
'start' => '88602780',
'end' => '88603117',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-470C15.1-001'
),
'ENST00000384838' => array(
'start' => '88666853',
'end' => '88666939',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR9-2-201'
),
'ENST00000340208' => array(
'start' => '88718158',
'end' => '88904082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-005'
),
'ENST00000424173' => array(
'start' => '88718222',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-004'
),
'ENST00000437473' => array(
'start' => '88720349',
'end' => '88883233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-003'
),
'ENST00000502831' => array(
'start' => '88761292',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-007'
),
'ENST00000502983' => array(
'start' => '88761200',
'end' => '88884568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-010'
),
'ENST00000503075' => array(
'start' => '88761325',
'end' => '88883227',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-013'
),
'ENST00000503554' => array(
'start' => '88731896',
'end' => '88785542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-019'
),
'ENST00000503955' => array(
'start' => '88887392',
'end' => '88904052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-008'
),
'ENST00000504921' => array(
'start' => '88718242',
'end' => '88823927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-201'
),
'ENST00000506554' => array(
'start' => '88720844',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-025'
),
'ENST00000506716' => array(
'start' => '88731852',
'end' => '88824340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-016'
),
'ENST00000507984' => array(
'start' => '88761023',
'end' => '88827158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-015'
),
'ENST00000508569' => array(
'start' => '88722574',
'end' => '88883159',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-022'
),
'ENST00000508610' => array(
'start' => '88761209',
'end' => '88877977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-014'
),
'ENST00000509349' => array(
'start' => '88823861',
'end' => '88883224',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-011'
),
'ENST00000509373' => array(
'start' => '88804770',
'end' => '88824275',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-017'
),
'ENST00000510942' => array(
'start' => '88720825',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-024'
),
'ENST00000510980' => array(
'start' => '88722837',
'end' => '88729519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-021'
),
'ENST00000511086' => array(
'start' => '88804526',
'end' => '88883174',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-018'
),
'ENST00000513252' => array(
'start' => '88731807',
'end' => '88883147',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-012'
),
'ENST00000514015' => array(
'start' => '88722595',
'end' => '88883224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-023'
),
'ENST00000514028' => array(
'start' => '88720349',
'end' => '88883214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-001'
),
'ENST00000515093' => array(
'start' => '88823796',
'end' => '88889324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-006'
),
'ENST00000515715' => array(
'start' => '88731444',
'end' => '88749124',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-020'
),
'ENST00000500197' => array(
'start' => '88664445',
'end' => '88673339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-003'
),
'ENST00000502301' => array(
'start' => '88540728',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-010'
),
'ENST00000504246' => array(
'start' => '88666320',
'end' => '88676298',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-002'
),
'ENST00000505030' => array(
'start' => '88664445',
'end' => '88673325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-005'
),
'ENST00000506014' => array(
'start' => '88540727',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-009'
),
'ENST00000506664' => array(
'start' => '88540511',
'end' => '88611776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-012'
),
'ENST00000506978' => array(
'start' => '88507546',
'end' => '88684808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-013'
),
'ENST00000508885' => array(
'start' => '88540831',
'end' => '88659835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-011'
),
'ENST00000509265' => array(
'start' => '88667353',
'end' => '88684823',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-016'
),
'ENST00000509405' => array(
'start' => '88540847',
'end' => '88684805',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-014'
),
'ENST00000509783' => array(
'start' => '88666879',
'end' => '88684770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-015'
),
'ENST00000511014' => array(
'start' => '88664446',
'end' => '88684936',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-001'
),
'ENST00000513026' => array(
'start' => '88667274',
'end' => '88678448',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-008'
),
'ENST00000513805' => array(
'start' => '88540884',
'end' => '88684825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-007'
),
'ENST00000513893' => array(
'start' => '88667342',
'end' => '88691041',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-006'
),
'ENST00000515885' => array(
'start' => '88666954',
'end' => '88672696',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-004'
),
'ENST00000506665' => array(
'start' => '88892257',
'end' => '88965896',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-011'
),
'ENST00000508521' => array(
'start' => '88943087',
'end' => '89075331',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-013'
),
'ENST00000508718' => array(
'start' => '88889454',
'end' => '88943298',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-009'
),
'ENST00000508742' => array(
'start' => '89418807',
'end' => '89466398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-014'
),
'ENST00000509179' => array(
'start' => '88889374',
'end' => '88965872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-002'
),
'ENST00000511100' => array(
'start' => '88883328',
'end' => '89032293',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-004'
),
'ENST00000511876' => array(
'start' => '88889451',
'end' => '88905270',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-008'
),
'ENST00000512585' => array(
'start' => '88883417',
'end' => '89305171',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-006'
),
'ENST00000513704' => array(
'start' => '88889308',
'end' => '88943343',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-007'
),
'ENST00000514011' => array(
'start' => '88889335',
'end' => '88967279',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-001'
),
'ENST00000514092' => array(
'start' => '88889445',
'end' => '89465982',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-003'
),
'ENST00000514158' => array(
'start' => '88889460',
'end' => '88941370',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-010'
),
'ENST00000514571' => array(
'start' => '88965875',
'end' => '89168668',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-012'
),
'ENST00000514794' => array(
'start' => '88883399',
'end' => '88943214',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-005'
),
'ENST00000508719' => array(
'start' => '88692645',
'end' => '88693972',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-467M3.3-001'
),
'ENST00000511000' => array(
'start' => '88692651',
'end' => '88692859',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.2-001'
),
'ENSDART00000044083' => array(
'start' => '49966161',
'end' => '50042936',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-201'
),
'ENSDART00000135911' => array(
'start' => '49966176',
'end' => '50043000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-001'
),
'ENSDART00000138702' => array(
'start' => '50037192',
'end' => '50042987',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'mef2cb-002'
),
'ENSDART00000117420' => array(
'start' => '49952889',
'end' => '49952975',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-9-5.1-201'
),
'ENSDART00000140395' => array(
'start' => '49892948',
'end' => '49958412',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-001'
),
'ENSDART00000141802' => array(
'start' => '49893067',
'end' => '49958068',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-003'
),
'ENSDART00000144252' => array(
'start' => '49892946',
'end' => '49955486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-002'
),
'ENSDART00000153239' => array(
'start' => '49892948',
'end' => '49958038',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-004'
),
'ENSMUST00000005722' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-201'
),
'ENSMUST00000163888' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-202'
),
'ENSMUST00000185052' => array(
'start' => '83573607',
'end' => '83664472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-001'
),
'ENSMUST00000052354' => array(
'start' => '83738881',
'end' => '83741307',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-201'
),
'ENSMUST00000131907' => array(
'start' => '83721381',
'end' => '83741308',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-001'
),
'ENSMUST00000182701' => array(
'start' => '83732566',
'end' => '83735521',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-003'
),
'ENSMUST00000182788' => array(
'start' => '83728106',
'end' => '83735669',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-002'
),
'ENSMUST00000185281' => array(
'start' => '83721381',
'end' => '83872680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-005'
),
'ENSMUST00000187663' => array(
'start' => '83738863',
'end' => '83884194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-006'
),
'ENSMUST00000083490' => array(
'start' => '83738806',
'end' => '83738892',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir9-2-201'
),
'ENSMUST00000181705' => array(
'start' => '83723442',
'end' => '83729582',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26803-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
'ENSG00000250705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart'
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
'ENSG00000250377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle',
(int) 1 => 'Testis',
(int) 2 => 'Bladder',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Brain',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Placenta',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Colon',
(int) 36 => 'Colon',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Brain',
(int) 42 => 'Testis'
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
'ENSDARG00000009418' => array(
[maximum depth reached]
),
'ENSDARG00000095715' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Muscle',
(int) 11 => 'Brain',
(int) 12 => 'Muscle'
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005583' => array(
[maximum depth reached]
),
'ENSMUSG00000050334' => array(
[maximum depth reached]
),
'ENSMUSG00000097265' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Placenta',
(int) 49 => 'Kidney',
(int) 50 => 'Muscle',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0003',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '82972882',
'seq_end' => '82974629',
'region_length' => '1747',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
)
$gene_el = array(
'ENST00000508719' => array(
'Adrenal' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.330',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.03'
)
)
)
$gene_key = 'ENSG00000250377'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.330',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.03'
)
)
$tran_key = 'ENST00000508719'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000245864' => null,
'ENSG00000250705' => null,
'ENSG00000273878' => 'microRNA 9-2',
'ENSG00000081189' => 'myocyte enhancer factor 2C',
'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
'ENSG00000248309' => 'MEF2C antisense RNA 1',
'ENSG00000250377' => null,
'ENSG00000250555' => null,
'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
'ENSMUSG00000065424' => 'microRNA 9-2',
'ENSMUSG00000097265' => 'predicted gene, 26803'
),
'gene_name_arr' => array(
'ENSG00000245864' => 'CTC-467M3.1',
'ENSG00000250705' => 'CTC-470C15.1',
'ENSG00000273878' => 'MIR9-2',
'ENSG00000081189' => 'MEF2C',
'ENSG00000245526' => 'LINC00461',
'ENSG00000248309' => 'MEF2C-AS1',
'ENSG00000250377' => 'CTC-467M3.3',
'ENSG00000250555' => 'CTC-467M3.2',
'ENSDARG00000009418' => 'mef2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'Mef2c',
'ENSMUSG00000050334' => 'C130071C03Rik',
'ENSMUSG00000065424' => 'Mir9-2',
'ENSMUSG00000097265' => 'Gm26803'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 20 => 'Brain',
(int) 33 => 'Breast',
(int) 38 => 'Colon',
(int) 47 => 'Heart',
(int) 56 => 'Kidney',
(int) 66 => 'Liver',
(int) 75 => 'Lung',
(int) 80 => 'Muscle',
(int) 92 => 'Ovary',
(int) 99 => 'Placenta',
(int) 108 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 79,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000510274' => array(
'start' => '88676218',
'end' => '88722831',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.1-001'
),
'ENST00000509149' => array(
'start' => '88602780',
'end' => '88603117',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-470C15.1-001'
),
'ENST00000384838' => array(
'start' => '88666853',
'end' => '88666939',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR9-2-201'
),
'ENST00000340208' => array(
'start' => '88718158',
'end' => '88904082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-005'
),
'ENST00000424173' => array(
'start' => '88718222',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-004'
),
'ENST00000437473' => array(
'start' => '88720349',
'end' => '88883233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-003'
),
'ENST00000502831' => array(
'start' => '88761292',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-007'
),
'ENST00000502983' => array(
'start' => '88761200',
'end' => '88884568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-010'
),
'ENST00000503075' => array(
'start' => '88761325',
'end' => '88883227',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-013'
),
'ENST00000503554' => array(
'start' => '88731896',
'end' => '88785542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-019'
),
'ENST00000503955' => array(
'start' => '88887392',
'end' => '88904052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-008'
),
'ENST00000504921' => array(
'start' => '88718242',
'end' => '88823927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-201'
),
'ENST00000506554' => array(
'start' => '88720844',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-025'
),
'ENST00000506716' => array(
'start' => '88731852',
'end' => '88824340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-016'
),
'ENST00000507984' => array(
'start' => '88761023',
'end' => '88827158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-015'
),
'ENST00000508569' => array(
'start' => '88722574',
'end' => '88883159',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-022'
),
'ENST00000508610' => array(
'start' => '88761209',
'end' => '88877977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-014'
),
'ENST00000509349' => array(
'start' => '88823861',
'end' => '88883224',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-011'
),
'ENST00000509373' => array(
'start' => '88804770',
'end' => '88824275',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-017'
),
'ENST00000510942' => array(
'start' => '88720825',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-024'
),
'ENST00000510980' => array(
'start' => '88722837',
'end' => '88729519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-021'
),
'ENST00000511086' => array(
'start' => '88804526',
'end' => '88883174',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-018'
),
'ENST00000513252' => array(
'start' => '88731807',
'end' => '88883147',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-012'
),
'ENST00000514015' => array(
'start' => '88722595',
'end' => '88883224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-023'
),
'ENST00000514028' => array(
'start' => '88720349',
'end' => '88883214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-001'
),
'ENST00000515093' => array(
'start' => '88823796',
'end' => '88889324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-006'
),
'ENST00000515715' => array(
'start' => '88731444',
'end' => '88749124',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-020'
),
'ENST00000500197' => array(
'start' => '88664445',
'end' => '88673339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-003'
),
'ENST00000502301' => array(
'start' => '88540728',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-010'
),
'ENST00000504246' => array(
'start' => '88666320',
'end' => '88676298',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-002'
),
'ENST00000505030' => array(
'start' => '88664445',
'end' => '88673325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-005'
),
'ENST00000506014' => array(
'start' => '88540727',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-009'
),
'ENST00000506664' => array(
'start' => '88540511',
'end' => '88611776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-012'
),
'ENST00000506978' => array(
'start' => '88507546',
'end' => '88684808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-013'
),
'ENST00000508885' => array(
'start' => '88540831',
'end' => '88659835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-011'
),
'ENST00000509265' => array(
'start' => '88667353',
'end' => '88684823',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-016'
),
'ENST00000509405' => array(
'start' => '88540847',
'end' => '88684805',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-014'
),
'ENST00000509783' => array(
'start' => '88666879',
'end' => '88684770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-015'
),
'ENST00000511014' => array(
'start' => '88664446',
'end' => '88684936',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-001'
),
'ENST00000513026' => array(
'start' => '88667274',
'end' => '88678448',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-008'
),
'ENST00000513805' => array(
'start' => '88540884',
'end' => '88684825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-007'
),
'ENST00000513893' => array(
'start' => '88667342',
'end' => '88691041',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-006'
),
'ENST00000515885' => array(
'start' => '88666954',
'end' => '88672696',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-004'
),
'ENST00000506665' => array(
'start' => '88892257',
'end' => '88965896',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-011'
),
'ENST00000508521' => array(
'start' => '88943087',
'end' => '89075331',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-013'
),
'ENST00000508718' => array(
'start' => '88889454',
'end' => '88943298',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-009'
),
'ENST00000508742' => array(
'start' => '89418807',
'end' => '89466398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-014'
),
'ENST00000509179' => array(
'start' => '88889374',
'end' => '88965872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-002'
),
'ENST00000511100' => array(
'start' => '88883328',
'end' => '89032293',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-004'
),
'ENST00000511876' => array(
'start' => '88889451',
'end' => '88905270',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-008'
),
'ENST00000512585' => array(
'start' => '88883417',
'end' => '89305171',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-006'
),
'ENST00000513704' => array(
'start' => '88889308',
'end' => '88943343',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-007'
),
'ENST00000514011' => array(
'start' => '88889335',
'end' => '88967279',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-001'
),
'ENST00000514092' => array(
'start' => '88889445',
'end' => '89465982',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-003'
),
'ENST00000514158' => array(
'start' => '88889460',
'end' => '88941370',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-010'
),
'ENST00000514571' => array(
'start' => '88965875',
'end' => '89168668',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-012'
),
'ENST00000514794' => array(
'start' => '88883399',
'end' => '88943214',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-005'
),
'ENST00000508719' => array(
'start' => '88692645',
'end' => '88693972',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-467M3.3-001'
),
'ENST00000511000' => array(
'start' => '88692651',
'end' => '88692859',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.2-001'
),
'ENSDART00000044083' => array(
'start' => '49966161',
'end' => '50042936',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-201'
),
'ENSDART00000135911' => array(
'start' => '49966176',
'end' => '50043000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-001'
),
'ENSDART00000138702' => array(
'start' => '50037192',
'end' => '50042987',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'mef2cb-002'
),
'ENSDART00000117420' => array(
'start' => '49952889',
'end' => '49952975',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-9-5.1-201'
),
'ENSDART00000140395' => array(
'start' => '49892948',
'end' => '49958412',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-001'
),
'ENSDART00000141802' => array(
'start' => '49893067',
'end' => '49958068',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-003'
),
'ENSDART00000144252' => array(
'start' => '49892946',
'end' => '49955486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-002'
),
'ENSDART00000153239' => array(
'start' => '49892948',
'end' => '49958038',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-004'
),
'ENSMUST00000005722' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-201'
),
'ENSMUST00000163888' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-202'
),
'ENSMUST00000185052' => array(
'start' => '83573607',
'end' => '83664472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-001'
),
'ENSMUST00000052354' => array(
'start' => '83738881',
'end' => '83741307',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-201'
),
'ENSMUST00000131907' => array(
'start' => '83721381',
'end' => '83741308',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-001'
),
'ENSMUST00000182701' => array(
'start' => '83732566',
'end' => '83735521',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-003'
),
'ENSMUST00000182788' => array(
'start' => '83728106',
'end' => '83735669',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-002'
),
'ENSMUST00000185281' => array(
'start' => '83721381',
'end' => '83872680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-005'
),
'ENSMUST00000187663' => array(
'start' => '83738863',
'end' => '83884194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-006'
),
'ENSMUST00000083490' => array(
'start' => '83738806',
'end' => '83738892',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir9-2-201'
),
'ENSMUST00000181705' => array(
'start' => '83723442',
'end' => '83729582',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26803-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
'ENSG00000250705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart'
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
'ENSG00000250377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle',
(int) 1 => 'Testis',
(int) 2 => 'Bladder',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Brain',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Placenta',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Colon',
(int) 36 => 'Colon',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Brain',
(int) 42 => 'Testis'
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
'ENSDARG00000009418' => array(
[maximum depth reached]
),
'ENSDARG00000095715' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Muscle',
(int) 11 => 'Brain',
(int) 12 => 'Muscle'
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005583' => array(
[maximum depth reached]
),
'ENSMUSG00000050334' => array(
[maximum depth reached]
),
'ENSMUSG00000097265' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Placenta',
(int) 49 => 'Kidney',
(int) 50 => 'Muscle',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Liver'
)
)
)
$gene_desc_arr = array(
'ENSG00000245864' => null,
'ENSG00000250705' => null,
'ENSG00000273878' => 'microRNA 9-2',
'ENSG00000081189' => 'myocyte enhancer factor 2C',
'ENSG00000245526' => 'long intergenic non-protein coding RNA 461',
'ENSG00000248309' => 'MEF2C antisense RNA 1',
'ENSG00000250377' => null,
'ENSG00000250555' => null,
'ENSDARG00000009418' => 'myocyte enhancer factor 2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'myocyte enhancer factor 2C',
'ENSMUSG00000050334' => 'RIKEN cDNA C130071C03 gene',
'ENSMUSG00000065424' => 'microRNA 9-2',
'ENSMUSG00000097265' => 'predicted gene, 26803'
)
$gene_name_arr = array(
'ENSG00000245864' => 'CTC-467M3.1',
'ENSG00000250705' => 'CTC-470C15.1',
'ENSG00000273878' => 'MIR9-2',
'ENSG00000081189' => 'MEF2C',
'ENSG00000245526' => 'LINC00461',
'ENSG00000248309' => 'MEF2C-AS1',
'ENSG00000250377' => 'CTC-467M3.3',
'ENSG00000250555' => 'CTC-467M3.2',
'ENSDARG00000009418' => 'mef2cb',
'ENSDARG00000081362' => 'dre-mir-9-5',
'ENSDARG00000095715' => 'si:ch211-202e12.3',
'ENSMUSG00000005583' => 'Mef2c',
'ENSMUSG00000050334' => 'C130071C03Rik',
'ENSMUSG00000065424' => 'Mir9-2',
'ENSMUSG00000097265' => 'Gm26803'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0001',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '88540043',
'seq_end' => '88678047',
'region_length' => '138004',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0002',
'tax_id' => '9606',
'chromosome' => '5',
'seq_start' => '88678048',
'seq_end' => '89377026',
'region_length' => '698978',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0003',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '82972882',
'seq_end' => '82974629',
'region_length' => '1747',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0004',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '49916006',
'seq_end' => '50254911',
'region_length' => '338905',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0005',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '83484793',
'seq_end' => '83885112',
'region_length' => '400319',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 6 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 20 => 'Brain',
(int) 33 => 'Breast',
(int) 38 => 'Colon',
(int) 47 => 'Heart',
(int) 56 => 'Kidney',
(int) 66 => 'Liver',
(int) 75 => 'Lung',
(int) 80 => 'Muscle',
(int) 92 => 'Ovary',
(int) 99 => 'Placenta',
(int) 108 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 79
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000510274' => array(
'start' => '88676218',
'end' => '88722831',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.1-001'
),
'ENST00000509149' => array(
'start' => '88602780',
'end' => '88603117',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'CTC-470C15.1-001'
),
'ENST00000384838' => array(
'start' => '88666853',
'end' => '88666939',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR9-2-201'
),
'ENST00000340208' => array(
'start' => '88718158',
'end' => '88904082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-005'
),
'ENST00000424173' => array(
'start' => '88718222',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-004'
),
'ENST00000437473' => array(
'start' => '88720349',
'end' => '88883233',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-003'
),
'ENST00000502831' => array(
'start' => '88761292',
'end' => '88904105',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-007'
),
'ENST00000502983' => array(
'start' => '88761200',
'end' => '88884568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-010'
),
'ENST00000503075' => array(
'start' => '88761325',
'end' => '88883227',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-013'
),
'ENST00000503554' => array(
'start' => '88731896',
'end' => '88785542',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-019'
),
'ENST00000503955' => array(
'start' => '88887392',
'end' => '88904052',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-008'
),
'ENST00000504921' => array(
'start' => '88718242',
'end' => '88823927',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-201'
),
'ENST00000506554' => array(
'start' => '88720844',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-025'
),
'ENST00000506716' => array(
'start' => '88731852',
'end' => '88824340',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-016'
),
'ENST00000507984' => array(
'start' => '88761023',
'end' => '88827158',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-015'
),
'ENST00000508569' => array(
'start' => '88722574',
'end' => '88883159',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-022'
),
'ENST00000508610' => array(
'start' => '88761209',
'end' => '88877977',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-014'
),
'ENST00000509349' => array(
'start' => '88823861',
'end' => '88883224',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-011'
),
'ENST00000509373' => array(
'start' => '88804770',
'end' => '88824275',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-017'
),
'ENST00000510942' => array(
'start' => '88720825',
'end' => '88883172',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-024'
),
'ENST00000510980' => array(
'start' => '88722837',
'end' => '88729519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-021'
),
'ENST00000511086' => array(
'start' => '88804526',
'end' => '88883174',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-018'
),
'ENST00000513252' => array(
'start' => '88731807',
'end' => '88883147',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-012'
),
'ENST00000514015' => array(
'start' => '88722595',
'end' => '88883224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-023'
),
'ENST00000514028' => array(
'start' => '88720349',
'end' => '88883214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MEF2C-001'
),
'ENST00000515093' => array(
'start' => '88823796',
'end' => '88889324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MEF2C-006'
),
'ENST00000515715' => array(
'start' => '88731444',
'end' => '88749124',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MEF2C-020'
),
'ENST00000500197' => array(
'start' => '88664445',
'end' => '88673339',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-003'
),
'ENST00000502301' => array(
'start' => '88540728',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-010'
),
'ENST00000504246' => array(
'start' => '88666320',
'end' => '88676298',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-002'
),
'ENST00000505030' => array(
'start' => '88664445',
'end' => '88673325',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-005'
),
'ENST00000506014' => array(
'start' => '88540727',
'end' => '88678445',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-009'
),
'ENST00000506664' => array(
'start' => '88540511',
'end' => '88611776',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-012'
),
'ENST00000506978' => array(
'start' => '88507546',
'end' => '88684808',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-013'
),
'ENST00000508885' => array(
'start' => '88540831',
'end' => '88659835',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-011'
),
'ENST00000509265' => array(
'start' => '88667353',
'end' => '88684823',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-016'
),
'ENST00000509405' => array(
'start' => '88540847',
'end' => '88684805',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-014'
),
'ENST00000509783' => array(
'start' => '88666879',
'end' => '88684770',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-015'
),
'ENST00000511014' => array(
'start' => '88664446',
'end' => '88684936',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-001'
),
'ENST00000513026' => array(
'start' => '88667274',
'end' => '88678448',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-008'
),
'ENST00000513805' => array(
'start' => '88540884',
'end' => '88684825',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-007'
),
'ENST00000513893' => array(
'start' => '88667342',
'end' => '88691041',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-006'
),
'ENST00000515885' => array(
'start' => '88666954',
'end' => '88672696',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00461-004'
),
'ENST00000506665' => array(
'start' => '88892257',
'end' => '88965896',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-011'
),
'ENST00000508521' => array(
'start' => '88943087',
'end' => '89075331',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-013'
),
'ENST00000508718' => array(
'start' => '88889454',
'end' => '88943298',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-009'
),
'ENST00000508742' => array(
'start' => '89418807',
'end' => '89466398',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-014'
),
'ENST00000509179' => array(
'start' => '88889374',
'end' => '88965872',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-002'
),
'ENST00000511100' => array(
'start' => '88883328',
'end' => '89032293',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-004'
),
'ENST00000511876' => array(
'start' => '88889451',
'end' => '88905270',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-008'
),
'ENST00000512585' => array(
'start' => '88883417',
'end' => '89305171',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-006'
),
'ENST00000513704' => array(
'start' => '88889308',
'end' => '88943343',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-007'
),
'ENST00000514011' => array(
'start' => '88889335',
'end' => '88967279',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-001'
),
'ENST00000514092' => array(
'start' => '88889445',
'end' => '89465982',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-003'
),
'ENST00000514158' => array(
'start' => '88889460',
'end' => '88941370',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-010'
),
'ENST00000514571' => array(
'start' => '88965875',
'end' => '89168668',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-012'
),
'ENST00000514794' => array(
'start' => '88883399',
'end' => '88943214',
'transcript_biotype' => 'antisense',
'transcript_name' => 'MEF2C-AS1-005'
),
'ENST00000508719' => array(
'start' => '88692645',
'end' => '88693972',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTC-467M3.3-001'
),
'ENST00000511000' => array(
'start' => '88692651',
'end' => '88692859',
'transcript_biotype' => 'antisense',
'transcript_name' => 'CTC-467M3.2-001'
),
'ENSDART00000044083' => array(
'start' => '49966161',
'end' => '50042936',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-201'
),
'ENSDART00000135911' => array(
'start' => '49966176',
'end' => '50043000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mef2cb-001'
),
'ENSDART00000138702' => array(
'start' => '50037192',
'end' => '50042987',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'mef2cb-002'
),
'ENSDART00000117420' => array(
'start' => '49952889',
'end' => '49952975',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'dre-mir-9-5.1-201'
),
'ENSDART00000140395' => array(
'start' => '49892948',
'end' => '49958412',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-001'
),
'ENSDART00000141802' => array(
'start' => '49893067',
'end' => '49958068',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-003'
),
'ENSDART00000144252' => array(
'start' => '49892946',
'end' => '49955486',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-002'
),
'ENSDART00000153239' => array(
'start' => '49892948',
'end' => '49958038',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-202e12.3-004'
),
'ENSMUST00000005722' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-201'
),
'ENSMUST00000163888' => array(
'start' => '83504034',
'end' => '83667079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-202'
),
'ENSMUST00000185052' => array(
'start' => '83573607',
'end' => '83664472',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mef2c-001'
),
'ENSMUST00000052354' => array(
'start' => '83738881',
'end' => '83741307',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-201'
),
'ENSMUST00000131907' => array(
'start' => '83721381',
'end' => '83741308',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-001'
),
'ENSMUST00000182701' => array(
'start' => '83732566',
'end' => '83735521',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-003'
),
'ENSMUST00000182788' => array(
'start' => '83728106',
'end' => '83735669',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-002'
),
'ENSMUST00000185281' => array(
'start' => '83721381',
'end' => '83872680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-005'
),
'ENSMUST00000187663' => array(
'start' => '83738863',
'end' => '83884194',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C130071C03Rik-006'
),
'ENSMUST00000083490' => array(
'start' => '83738806',
'end' => '83738892',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir9-2-201'
),
'ENSMUST00000181705' => array(
'start' => '83723442',
'end' => '83729582',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26803-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007M9_0001' => array(
'genes_in_region' => array(
'ENSG00000250705' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart'
)
),
'CIL_0007M9_0002' => array(
'genes_in_region' => array(
'ENSG00000250377' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Muscle',
(int) 1 => 'Testis',
(int) 2 => 'Bladder',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Brain',
(int) 6 => 'Colon',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Placenta',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Colon',
(int) 36 => 'Colon',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Brain',
(int) 42 => 'Testis'
)
),
'CIL_0007M9_0004' => array(
'genes_in_region' => array(
'ENSDARG00000009418' => array(
[maximum depth reached]
),
'ENSDARG00000095715' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Muscle',
(int) 3 => 'Heart',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Brain',
(int) 10 => 'Muscle',
(int) 11 => 'Brain',
(int) 12 => 'Muscle'
)
),
'CIL_0007M9_0005' => array(
'genes_in_region' => array(
'ENSMUSG00000005583' => array(
[maximum depth reached]
),
'ENSMUSG00000050334' => array(
[maximum depth reached]
),
'ENSMUSG00000097265' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis',
(int) 36 => 'Bladder',
(int) 37 => 'Brain',
(int) 38 => 'Colon',
(int) 39 => 'Heart',
(int) 40 => 'Kidney',
(int) 41 => 'Liver',
(int) 42 => 'Muscle',
(int) 43 => 'Ovary',
(int) 44 => 'Placenta',
(int) 45 => 'Bladder',
(int) 46 => 'Brain',
(int) 47 => 'Colon',
(int) 48 => 'Placenta',
(int) 49 => 'Kidney',
(int) 50 => 'Muscle',
(int) 51 => 'Bladder',
(int) 52 => 'Brain',
(int) 53 => 'Kidney',
(int) 54 => 'Liver'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007M9_0003',
'tax_id' => '10090',
'chromosome' => '13',
'seq_start' => '82972882',
'seq_end' => '82974629',
'region_length' => '1747',
'region_type' => 'UCNEbase',
'el_id' => 'MEF2C'
)
)
$gene_el = array(
'ENST00000508719' => array(
'Adrenal' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.330',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.03'
)
)
)
$gene_key = 'ENSG00000250377'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.032',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.330',
'stddev_FPKM' => '0.01'
),
'Testis' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.03'
)
)
$tran_key = 'ENST00000508719'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(CTC-470C15.1)