C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000051556 abca1b-201 ENSDARG00000079009 7955 + 14:6395639-6484954 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000051556
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000051556 1.032±0.52 1.559±1.22 1.861±0.26 2.499±0.00 0.256±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0016887 IEA ATPase activity
GO:0017111 IEA nucleoside-triphosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370225 ABCA4-001 protein_coding Homo_sapiens 1e-39 171
ENST00000465352 ABCA4-002 processed_transcript Homo_sapiens 5e-16 90
ENST00000484388 ABCA4-006 processed_transcript Homo_sapiens 0.000000000000002 86
ENST00000536513 ABCA4-201 protein_coding Homo_sapiens 6e-40 171

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