C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core-binding factor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000059961 cbfb-001 ENSDARG00000040917 7955 + 18:22774824-22852023 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleENSDART00000059961
Transcript ID Brain Liver Muscle
ENSDART00000059961 1.028±0.00 0.121±0.00 1.250±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001076 IC RNA polymerase II transcription factor binding transcription factor activity
GO:0003677 IPI DNA binding
GO:0003713 IEA transcription coactivator activity
GO:0005634 IEA nucleus
GO:0006357 IC regulation of transcription from RNA polymerase II promoter
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0016513 IPI core-binding factor complex
GO:0030018 IDA Z disc
GO:0045214 IMP sarcomere organization
GO:0046982 IPI protein heterodimerization activity
GO:0048769 IMP sarcomerogenesis
GO:0060047 IMP heart contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052209 Cbfb-001 protein_coding Mus_musculus 0 355
ENSMUST00000109392 Cbfb-003 protein_coding Mus_musculus 0 339
ENSMUST00000109394 Cbfb-004 protein_coding Mus_musculus 4.2039e-45 187
ENSMUST00000109395 Cbfb-002 protein_coding Mus_musculus 0 316

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