C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: core binding factor beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052209 Cbfb-001 ENSMUSG00000031885 10090 + 8:105170674-105217989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052209
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052209 1.292±0.10 1.387±0.00 4.745±0.08 3.215±0.10 2.426±0.00 0.917±0.00 1.235±0.42 0.980±0.39 1.545±0.93 2.328±0.47 12.318±1.37 2.506±1.83 4.049±1.68 1.471±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005T3 CIL_0005T3_0002 CGP 8:105131800-105217989
CIL_0005T2 CIL_0005T2_0002 CGP 8:105170674-105253053

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IMP ossification
GO:0001649 IMP osteoblast differentiation
GO:0003677 IEA DNA binding
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0016020 IEA membrane
GO:0030098 IMP lymphocyte differentiation
GO:0030099 IMP myeloid cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048469 IMP cell maturation
GO:0060216 IMP definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000059961 cbfb-001 protein_coding Danio_rerio 0 355
ENST00000290858 CBFB-001 protein_coding Homo_sapiens 0 990
ENST00000412916 CBFB-003 protein_coding Homo_sapiens 0 1345
ENST00000561924 CBFB-007 protein_coding Homo_sapiens 0 647
ENST00000563939 CBFB-009 protein_coding Homo_sapiens 0 484
ENST00000564034 CBFB-006 protein_coding Homo_sapiens 0 486
ENST00000565389 CBFB-002 protein_coding Homo_sapiens 7.00649e-44 182
ENST00000566281 CBFB-011 retained_intron Homo_sapiens 0 329
ENST00000567947 CBFB-010 retained_intron Homo_sapiens 0 366

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