C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000061588 prrx1b-001 ENSDARG00000042027 7955 + 20:34536286-34545649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000061588
Transcript ID Brain Heart Kidney Muscle
ENSDART00000061588 0.120±0.04 0.084±0.04 0.044±0.05 0.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000284 CIL_000284_0001 CGP 20:34525760-34545649

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0010628 IMP positive regulation of gene expression
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041659 Prrx2-002 protein_coding Mus_musculus 7e-31 139
ENSMUST00000113592 Prrx2-001 protein_coding Mus_musculus 5e-31 139
ENSMUST00000150299 Prrx2-003 retained_intron Mus_musculus 5e-23 111

Loading